RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 DUSP9Q99956 384 aaKnown RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 CLPBQ9H078 707 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 MYH15Q9Y2K3 1946 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TUBAL3A6NHL2 446 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 GNB5O14775 395 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 AVILO75366 819 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 ACADMP11310 421 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 GRIA1P42261 906 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 ASMTP46597 345 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 FSTL1Q12841 308 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 HNRNPDQ14103 355 aaKnown RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 FAM102AQ5T9C2 384 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 HSDL2Q6YN16 418 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 CARNMT1Q8N4J0 409 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 LRRC17Q8N6Y2 441 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 OR2T34Q8NGX1 318 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 OR2T3Q8NH03 318 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 SNX18Q96RF0 628 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TRAF4Q9BUZ4 470 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 RNPEPQ9H4A4 650 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 PCDH10Q9P2E7 1040 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 KLRC4O43908 158 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 PRKYO43930 277 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 CST8O60676 142 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 ANXA1P04083 346 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 RPS17P08708 135 aaKnown RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 ETS1P14921 441 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 IMPDH1P20839 514 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 GSTM5P46439 218 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 HCAR3P49019 387 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 STARP49675 285 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TOB1P50616 345 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 GNG2P59768 71 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TEKQ02763 1124 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TCP10Q12799 353 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 FSCN1Q16658 493 aaKnown RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 HLA-DQA1Q5Y7H0 255 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 ANKRD26P1Q6NSI1 321 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 SPATA2LQ8IUW3 424 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 PRELID2Q8N945 189 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 NEK7Q8TDX7 302 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 KCNN1Q92952 543 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 AIF1LQ9BQI0 150 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 C7orf50Q9BRJ6 194 aaKnown RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 MXRA8Q9BRK3 442 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 FN3KQ9H479 309 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 GPN1Q9HCN4 374 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 PHF24Q9UPV7 400 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 PRRC2BQ5JSZ5 2229 aaKnown RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TOPAZ1Q8N9V7 1692 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 COL1A2P08123 1366 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 G3V2T6 193 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 MRASO14807 208 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 SEC24AO95486 1093 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 YES1P07947 543 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TCF4P15884 667 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 SLC1A6P48664 564 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TTLL4Q14679 1199 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 PTGR1Q14914 329 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TSHZ1Q6ZSZ6 1077 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 DCP1BQ8IZD4 617 aaKnown RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 LRRC47Q8N1G4 583 aaKnown RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF614Q8N883 585 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 RPRD1AQ96P16 312 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TRIB3Q96RU7 358 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 FICDQ9BVA6 458 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TRIP11Q15643 1979 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 hCG_1642624A0A1W2PR95 340 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 BPGMP07738 259 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 RARAP10276 462 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 GCLMP48507 274 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF143P52747 638 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 JAM2P57087 298 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 GALNTL6Q49A17 601 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TBCELQ5QJ74 424 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 RIPOR1Q6ZS17 1223 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 CABLES1Q8TDN4 633 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 HDAC2Q92769 488 aaKnown RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 PANX3Q96QZ0 392 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 EBNA1BP2Q99848 306 aaKnown RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 ZCCHC2Q9C0B9 1178 aaKnown RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 PAIP1Q9H074 479 aaKnown RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 EPB41L4BQ9H329 900 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 TASP1Q9H6P5 420 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 NCKAP1Q9Y2A7 1128 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 DHRS12A0PJE2 317 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 HAT1O14929 419 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 LIASO43766 372 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 HS6ST1O60243 411 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 PEX11AO75192 247 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 CD97P48960 835 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 IL2P60568 153 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 MPP2Q14168 576 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 ELOAQ14241 798 aaKnown RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 SLC14A2Q15849 920 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 NFE2Q16621 373 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 GRAMD1CQ8IYS0 662 aa5.28□□□□□ -1.56
SCN1A-201ENST00000303395 SAMD14Q8IZD0 417 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 C1orf52Q8N6N3 182 aaKnown RBP5.28□□□□□ -1.56
SCN1A-201ENST00000303395 STAG3L4Q8TBR4 150 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms