RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CYP11B1P15538 503 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 TSHRP16473 764 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 IGFALSP35858 605 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 EIF4A3P38919 411 aaKnown RBP14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 BECN1Q14457 450 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 MAN2A1Q16706 1144 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 TPD52L1Q16890 204 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 KIAA1614Q5VZ46 1190 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 RWDD4Q6NW29 188 aaKnown RBP14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 CRTC1Q6UUV9 634 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 GDPD4Q6W3E5 623 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 FAM114A1Q8IWE2 563 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 FBXO39Q8N4B4 442 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 ATL2Q8NHH9 583 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 CFAP57Q96MR6 1250 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 GDAP1L1Q96MZ0 367 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 KLHL32Q96NJ5 620 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 TMEM74Q96NL1 305 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 GFM1Q96RP9 751 aaKnown RBP14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 SYNDIG1Q9H7V2 258 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 TMEM248Q9NWD8 314 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 DKK3Q9UBP4 350 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 ACSL6Q9UKU0 697 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 ITM2BQ9Y287 266 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 HEMK1Q9Y5R4 338 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 UBR5O95071 2799 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 GOLGA8SH3BPF8 625 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 RAMP2O60895 175 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 CTSEP14091 401 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 HTR1BP28222 390 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 ACVRL1P37023 503 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 HK3P52790 923 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 PDX1P52945 283 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 INHBCP55103 352 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 ELP6Q0PNE2 266 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 C1orf61Q13536 156 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 RAPGEF1Q13905 1077 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 DRAP1Q14919 205 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 MANEALQ5VSG8 457 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 RAB11FIP2Q7L804 512 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 NLRP14Q86W24 1093 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 GKN2Q86XP6 184 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 IRF2BP1Q8IU81 584 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 OR6K2Q8NGY2 324 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 EPAS1Q99814 870 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 FAM117AQ9C073 453 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 CLPBQ9H078 707 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 TCEAL2Q9H3H9 227 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 KIAA1468Q9P260 1216 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 GULP1Q9UBP9 304 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 GGT7Q9UJ14 662 aa14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 AJAP1Q9UKB5 411 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-201ENST00000301897 D6RAR5 112 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 MMP20O60882 483 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 RASGRP1O95267 797 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 IGSF6O95976 241 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 ITGB2P05107 769 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 PNMA6AP0CW24 399 aaPredicted RBP14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 SFTPCP11686 197 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 XPAP23025 273 aaPredicted RBP14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 SLC5A2P31639 672 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 GKP32189 559 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 CCKBRP32239 447 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 ADRA1BP35368 520 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 CSRP3P50461 194 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 ATP11AP98196 1134 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 LRRC14Q15048 493 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 KLHL40Q2TBA0 621 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 USP53Q70EK8 1073 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 MLKLQ8NB16 471 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 TP53I13Q8NBR0 393 aaPredicted RBP14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 HCAR2Q8TDS4 363 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 TMEM159Q96B96 161 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 TBC1D31Q96DN5 1066 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 NDST4Q9H3R1 872 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 EPB41L5Q9HCM4 733 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 SEPT10Q9P0V9 454 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 DNAI1Q9UI46 699 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 GPR34Q9UPC5 381 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 MFHAS1Q9Y4C4 1052 aa14.95□□□□□ -0.02
CCDC88B-201ENST00000301897 NVLO15381 856 aaKnown RBP14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 ARHGAP6O43182 974 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 KDELR3O43731 214 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 GADD45BO75293 160 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 SDC4P31431 198 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 UGT1A5P35504 534 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 GRM3Q14832 879 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 INO80DQ53TQ3 878 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 TRNP1Q6NT89 227 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 STRADAQ7RTN6 431 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 PRICKLE2Q7Z3G6 844 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 ZNF677Q86XU0 584 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 JAMLQ86YT9 394 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 HID1Q8IV36 788 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 KYQ8NBH2 561 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 PCDH19Q8TAB3 1148 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 CCDC74AQ96AQ1 378 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 SGF29Q96ES7 293 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 CPEB1Q9BZB8 566 aaKnown RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms