RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TMEM245Q9H330 911 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 STARD7Q9NQZ5 370 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 TUBGCP4Q9UGJ1 667 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 UGT1A9O60656 530 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 PLIN3O60664 434 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 ATXN8OSP0DMR3 200 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 CRABP2P29373 138 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 NOMO1Q15155 1222 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 OFCC1Q8IZS5 231 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 EID3Q8N140 333 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 CBR4Q8N4T8 237 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 LRTOMTQ8WZ04 291 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 VPS33AQ96AX1 596 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 UGT1A7Q9HAW7 530 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 UGT1A10Q9HAW8 530 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 UGT1A8Q9HAW9 530 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 HNRNPCL2B2RXH8 293 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 SNAP91O60641 907 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 NADKO95544 446 aaPredicted RBP15.49■□□□□ 0.07
SHH-201ENST00000297261 CDH13P55290 713 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 MRPS6P82932 125 aaKnown RBP15.49■□□□□ 0.07
SHH-201ENST00000297261 DDX39BQ13838 428 aaKnown RBP15.49■□□□□ 0.07
SHH-201ENST00000297261 PRKD1Q15139 912 aaPredicted RBP15.49■□□□□ 0.07
SHH-201ENST00000297261 ZNF781Q8N8C0 355 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 UTP15Q8TED0 518 aaKnown RBP15.49■□□□□ 0.07
SHH-201ENST00000297261 TMEM216Q9P0N5 145 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 TRMT6Q9UJA5 497 aaKnown RBP15.49■□□□□ 0.07
SHH-201ENST00000297261 EIF3LQ9Y262 564 aaKnown RBP15.49■□□□□ 0.07
SHH-201ENST00000297261 CRYL1Q9Y2S2 319 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 SLC45A1Q9Y2W3 748 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 CCDC189A1A4V9 331 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 HOXC6P09630 235 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 GJA5P36382 358 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 CRYBB1P53674 252 aaPredicted RBP15.48■□□□□ 0.07
SHH-201ENST00000297261 CDH15P55291 814 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 ADIGQ0VDE8 80 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 CTBP1Q13363 440 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 NAB1Q13506 487 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 SLC10A6Q3KNW5 377 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 LIPMQ5VYY2 423 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 TTC23Q5W5X9 447 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 PIWIL4Q7Z3Z4 852 aaKnown RBP15.48■□□□□ 0.07
SHH-201ENST00000297261 TTC30AQ86WT1 665 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 ZNF276Q8N554 614 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 ALG9Q9H6U8 611 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 GOLGA2P5Q9HBQ8 144 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 TRIM43BA6NCK2 446 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 KCNU1A8MYU2 1149 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 PAPSS1O43252 624 aaPredicted RBP15.48■□□□□ 0.07
SHH-201ENST00000297261 CNOT3O75175 753 aaKnown RBP15.48■□□□□ 0.07
SHH-201ENST00000297261 SNAI1O95863 264 aaPredicted RBP15.48■□□□□ 0.07
SHH-201ENST00000297261 TFEBP19484 476 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 PTP4A2Q12974 167 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 ARL13AQ5H913 290 aaPredicted RBP15.48■□□□□ 0.07
SHH-201ENST00000297261 PAGE2BQ5JRK9 111 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 FAM183BPQ6ZVS7 135 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 SEC14L1Q92503 715 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 LPPQ93052 612 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 COQ10BQ9H8M1 238 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 USE1Q9NZ43 259 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 TPRKBQ9Y3C4 175 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 PRKAR2AP13861 404 aaKnown RBP15.48■□□□□ 0.07
SHH-201ENST00000297261 NPY2RP49146 381 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 IDH3AP50213 366 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 SCNN1GP51170 649 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 HK2P52789 917 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 GBE1Q04446 702 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 RAD51Q06609 339 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 ENPEPQ07075 957 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 C1orf220Q5T0J3 134 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 NEPROQ6NW34 567 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 ZNF467Q7Z7K2 595 aaPredicted RBP15.48■□□□□ 0.07
SHH-201ENST00000297261 UBASH3BQ8TF42 649 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 HTRA1Q92743 480 aa15.48■□□□□ 0.07
SHH-201ENST00000297261 GPATCH1Q9BRR8 931 aaKnown RBP15.48■□□□□ 0.07
SHH-201ENST00000297261 ABI2Q9NYB9 513 aaPredicted RBP15.48■□□□□ 0.07
SHH-201ENST00000297261 CKMT2P17540 419 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 CCR1P32246 355 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 TWF1Q12792 350 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 GRB14Q14449 540 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 STX19Q8N4C7 294 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 CPXM1Q96SM3 734 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 NT5MQ9NPB1 228 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 ST3GAL5Q9UNP4 418 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 ANKRD6Q9Y2G4 727 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 MTF2Q9Y483 593 aaPredicted RBP15.47■□□□□ 0.07
SHH-201ENST00000297261 PTPRJQ12913 1337 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 TCRBV7S3A2A0A539 114 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 UNCXA6NJT0 531 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 H3BNX3 289 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 SPTLC1O15269 473 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 KATNA1O75449 491 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 ASLP04424 464 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 DBTP11182 482 aaKnown RBP15.47■□□□□ 0.07
SHH-201ENST00000297261 ATP5F1P24539 256 aaPredicted RBP15.47■□□□□ 0.07
SHH-201ENST00000297261 IFNA8P32881 189 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 SP3Q02447 781 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 ITGA7Q13683 1181 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 SCIMPQ6UWF3 145 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 PSTKQ8IV42 348 aaKnown RBP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms