RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 CDH24Q86UP0 819 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 ZDHHC17Q8IUH5 632 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 OR7A2PQ8NGA2 310 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 LRRC19Q9H756 370 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 CXXC1Q9P0U4 656 aaPredicted RBP11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 NCF1BA6NI72 391 aaPredicted RBP11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 NCF1CA8MVU1 366 aaPredicted RBP11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 NCF1P14598 390 aaPredicted RBP11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 CHI3L1P36222 383 aaPredicted RBP11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 ALDH6A1Q02252 535 aaKnown RBP11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 LRRC38Q5VT99 294 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 BROXQ5VW32 411 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 ITFG1Q8TB96 612 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 DGCR14Q96DF8 476 aaKnown RBP11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 KLHL31Q9H511 634 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 ACTR8Q9H981 624 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 KLHL20Q9Y2M5 609 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 CCDC154A6NI56 674 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 PSMD12O00232 456 aaPredicted RBP11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 PIGNO95427 931 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 BMPR1AP36894 532 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 HK2P52789 917 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 PKNOX1P55347 436 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 SEZ6Q53EL9 994 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 C10orf120Q5SQS8 335 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 WDR59Q6PJI9 974 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 FBXO39Q8N4B4 442 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 FLCNQ8NFG4 579 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 ZSCAN18Q8TBC5 510 aaPredicted RBP11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 DNAJC19Q96DA6 116 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 PHF21BQ96EK2 531 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 NUAK2Q9H093 628 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 HDHD2Q9H0R4 259 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 NXF3Q9H4D5 531 aaKnown RBP11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 MINDY3Q9H8M7 445 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 CERS4Q9HA82 394 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 PRDM16Q9HAZ2 1276 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 TUBA8Q9NY65 449 aaPredicted RBP11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 SF3B1O75533 1304 aaKnown RBP eCLIP11.95□□□□□ -0.59e-9■■■■■ 62.4
SYNGAP1-201ENST00000293748 ZMYM2Q9UBW7 1377 aa11.95□□□□□ -0.5
SYNGAP1-201ENST00000293748 ERI2A8K979 691 aaKnown RBP11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 LRPAP1P30533 357 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 RPL9P32969 192 aaKnown RBP11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 CDC16Q13042 620 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 DPYSL3Q14195 570 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 DSC3Q14574 896 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 TSNQ15631 228 aaKnown RBP11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 EEF1DP3Q658K8 133 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 SCARA3Q6AZY7 606 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 ACMSDQ8TDX5 336 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 ART4Q93070 314 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 PNPLA3Q9NST1 481 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 CLCA2Q9UQC9 943 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 WDR27A2RRH5 827 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 SNAP91O60641 907 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 RECQL5O94762 991 aaPredicted RBP11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 B3GAT3O94766 335 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 MGAT1P26572 445 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 ADSSP30520 456 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 GPC1P35052 558 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 SLC11A2P49281 568 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 NEK3P51956 506 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 BST2Q10589 180 aaKnown RBP11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 NRF1Q16656 503 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 PGS1Q32NB8 556 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 ABRAXAS1Q6UWZ7 409 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 ADHFE1Q8IWW8 467 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 DEFB123Q8N688 67 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 WDR36Q8NI36 951 aaKnown RBP11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 LCTP09848 1927 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 FAM237BA0A1B0GVD1 139 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 NCANO14594 1321 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 CHADO15335 359 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 CPSF4O95639 269 aaKnown RBP11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 SLC2A4P14672 509 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 SLC25A3Q00325 362 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 COX10Q12887 443 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 ZNF177Q13360 481 aaPredicted RBP11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 TAF5Q15542 800 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 KLHL12Q53G59 568 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 USP39Q53GS9 565 aaKnown RBP11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 LACTB2Q53H82 288 aaPredicted RBP11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 KCNT2Q6UVM3 1135 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 KBTBD2Q8IY47 623 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 PRELID2Q8N945 189 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 FNDC5Q8NAU1 212 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 ZSWIM2Q8NEG5 633 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 SPPL2AQ8TCT8 520 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 S100ZQ8WXG8 99 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 PTCD3Q96EY7 689 aaKnown RBP11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 PHACTR1Q9C0D0 580 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 MRPL17Q9NRX2 175 aaKnown RBP11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 CDH9Q9ULB4 789 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 EFCAB10A6NFE3 127 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 SYNCRIPO60506 623 aaKnown RBP11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 CAPN1P07384 714 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 ORC1Q13415 861 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 NR1D2Q14995 579 aa11.94□□□□□ -0.5
SYNGAP1-201ENST00000293748 IKBIPQ70UQ0 350 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms