RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TRAPPC9Q96Q05 1148 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 EBNA1BP2Q99848 306 aaKnown RBP11.55□□□□□ -0.56
USP53-201ENST00000274030 NOL6Q9H6R4 1146 aaKnown RBP11.55□□□□□ -0.56
USP53-201ENST00000274030 ERAL1O75616 437 aaKnown RBP11.55□□□□□ -0.56
USP53-201ENST00000274030 MED26O95402 600 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 ITGAVP06756 1048 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 PRKAR2AP13861 404 aaKnown RBP11.55□□□□□ -0.56
USP53-201ENST00000274030 MRPS5P82675 430 aaKnown RBP11.55□□□□□ -0.56
USP53-201ENST00000274030 USP4Q13107 963 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 XKR6Q5GH73 641 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 LRRC38Q5VT99 294 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 ARHGAP36Q6ZRI8 547 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 PARGQ86W56 976 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 PHF13Q86YI8 300 aaPredicted RBP11.55□□□□□ -0.56
USP53-201ENST00000274030 C10orf107Q8IVU9 208 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 PPP1R16AQ96I34 528 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 LRRC19Q9H756 370 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 CYP4F2P78329 520 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 CYP4F3Q08477 520 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 IRAK1BP1Q5VVH5 260 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 FAM124AQ86V42 546 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 MAGEC3Q8TD91 643 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 TBC1D10AQ9BXI6 508 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 C1QTNF7Q9BXJ2 289 aa11.55□□□□□ -0.56
USP53-201ENST00000274030 ZNF624Q9P2J8 865 aaPredicted RBP11.55□□□□□ -0.56
USP53-201ENST00000274030 C15orf38-AP3S2A0A0A6YYH1 394 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 ERBB2P04626 1255 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 TTPAP49638 278 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 FKBP1AP62942 108 aaKnown RBP11.54□□□□□ -0.56
USP53-201ENST00000274030 TRAF3Q13114 568 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 MAP2K5Q13163 448 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 CERCAMQ5T4B2 595 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 BBS12Q6ZW61 710 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 ARPINQ7Z6K5 226 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 AGAP11Q8TF27 550 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 TOR4AQ9NXH8 423 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 FBXO5Q9UKT4 447 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 ITSN1Q15811 1721 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.54□□□□□ -0.56
USP53-201ENST00000274030 RNF225M0QZC1 329 aaPredicted RBP11.54□□□□□ -0.56
USP53-201ENST00000274030 OPLAHO14841 1288 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 MDM4O15151 490 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 KRT36O76013 467 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 OR1D2P34982 312 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 MATKP42679 507 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 CLCN5P51795 746 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 ZNF135P52742 658 aaPredicted RBP11.54□□□□□ -0.56
USP53-201ENST00000274030 PSME3P61289 254 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 PSMD5Q16401 504 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 ZNF697Q5TEC3 545 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 UTS2BQ765I0 119 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 AMIGO2Q86SJ2 522 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 KRT73Q86Y46 540 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 ART4Q93070 314 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 SNX15Q9NRS6 342 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 EGFL7Q9UHF1 273 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 MKL2Q9ULH7 1088 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 TCRBV9S1A1TA0A576 114 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 CYP2C18P33260 490 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 SP3Q02447 781 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 GPAT3Q53EU6 434 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 AFTPHQ6ULP2 937 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 TMC5Q6UXY8 1006 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 PLPPR4Q7Z2D5 763 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 FAM35AQ86V20 835 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 ADHFE1Q8IWW8 467 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 ZNF671Q8TAW3 534 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 PCDHGA4Q9Y5G9 962 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 H3BMM5 538 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 MFN2O95140 757 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 CSH1P0DML2 217 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 CSH2P0DML3 217 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 HOXB8P17481 243 aaPredicted RBP11.54□□□□□ -0.56
USP53-201ENST00000274030 DUSP4Q13115 394 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 DUPD1Q68J44 220 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 CES5AQ6NT32 575 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 KLHL17Q6TDP4 642 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 ARMC8Q8IUR7 673 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 MAB21L3Q8N8X9 362 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 CXorf40BQ96DE9 158 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 P2RY11Q96G91 374 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 ZNF670Q9BS34 389 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 MFSD1Q9H3U5 465 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 FAM105AQ9NUU6 356 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 AGO1Q9UL18 857 aaKnown RBP11.54□□□□□ -0.56
USP53-201ENST00000274030 NRG1Q02297 640 aaPredicted RBP11.54□□□□□ -0.56
USP53-201ENST00000274030 USP41Q3LFD5 358 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 CRTC3Q6UUV7 619 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 OFCC1Q8IZS5 231 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 C8orf59Q8N0T1 100 aaPredicted RBP11.54□□□□□ -0.56
USP53-201ENST00000274030 FBXW8Q8N3Y1 598 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 RCN3Q96D15 328 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 REXO5Q96IC2 774 aaKnown RBP11.54□□□□□ -0.56
USP53-201ENST00000274030 PCDHB18PQ96TA0 734 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 MRPS7Q9Y2R9 242 aaKnown RBP11.54□□□□□ -0.56
USP53-201ENST00000274030 C2CD2Q9Y426 696 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 NCANO14594 1321 aa11.54□□□□□ -0.56
USP53-201ENST00000274030 COL5A2P05997 1499 aaPredicted RBP11.53□□□□□ -0.56
USP53-201ENST00000274030 CENPXA8MT69 81 aa11.53□□□□□ -0.56
USP53-201ENST00000274030 MAP2K7O14733 419 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms