RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 EGFL7Q9UHF1 273 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 DSEQ9UL01 958 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 DERAQ9Y315 318 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 PCDHGA4Q9Y5G9 962 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 NRCAMQ92823 1304 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 RNF103-CHMP3A0A140T963 221 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 SMIM31A0A1B0GVY4 71 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 PSMD12O00232 456 aaPredicted RBP12.77□□□□□ -0.37
LIG1-201ENST00000263274 TFAP2AP05549 437 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 YWHAQP27348 245 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 CLCNKBP51801 687 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 STX1BP61266 288 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 XIAPP98170 497 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 ZNF789Q5FWF6 425 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 KLC3Q6P597 504 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 TAC4Q86UU9 113 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 LINC01465Q8N7H1 131 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 CATSPER1Q8NEC5 780 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 SCAMP5Q8TAC9 235 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 TRIM8Q9BZR9 551 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 ZBTB26Q9HCK0 441 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 WDR6Q9NNW5 1121 aaKnown RBP12.77□□□□□ -0.37
LIG1-201ENST00000263274 VTI1BQ9UEU0 232 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 TSR3Q9UJK0 312 aaKnown RBP12.77□□□□□ -0.37
LIG1-201ENST00000263274 PHF24Q9UPV7 400 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 FAM149AA5PLN7 773 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 RRN3P2A6NIE6 340 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 TRPC5OSA6NMA1 111 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 PDHXO00330 501 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 MRASO14807 208 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 B3GAT3O94766 335 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 PAMP19021 973 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 RPL10P27635 214 aaKnown RBP12.76□□□□□ -0.37
LIG1-201ENST00000263274 GRIA3P42263 894 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 CDH15P55291 814 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 MYLK3Q32MK0 819 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 ZFP1Q6P2D0 407 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 ZBTB49Q6ZSB9 765 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 ZBTB46Q86UZ6 589 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 NT5MQ9NPB1 228 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 ADARB2Q9NS39 739 aaKnown RBP12.76□□□□□ -0.37
LIG1-201ENST00000263274 TMEM30AQ9NV96 361 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 AAR2Q9Y312 384 aaKnown RBP12.76□□□□□ -0.37
LIG1-201ENST00000263274 SUPT3HO75486 399 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 CRCPO75575 148 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 POMCP01189 267 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 KCNA5P22460 613 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 RGS2P41220 211 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 LSAMPQ13449 338 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 B3GNT6Q6ZMB0 384 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 GET4Q7L5D6 327 aaPredicted RBP12.76□□□□□ -0.37
LIG1-201ENST00000263274 LSMEM2Q8N112 164 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 OR52K2Q8NGK3 314 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 ZFP28Q8NHY6 868 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 STYXQ8WUJ0 223 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 KLHL5Q96PQ7 755 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 PAAF1Q9BRP4 392 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 ANKRD6Q9Y2G4 727 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 ANK1P16157 1881 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 PSME4Q14997 1843 aa12.76□□□□□ -0.37
LIG1-201ENST00000263274 RGPD3A6NKT7 1758 aaPredicted RBP12.75□□□□□ -0.37
LIG1-201ENST00000263274 RGPD4Q7Z3J3 1758 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 HEATR9A2RTY3 570 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 ERI2A8K979 691 aaKnown RBP12.75□□□□□ -0.37
LIG1-201ENST00000263274 SLCO1B7G3V0H7 640 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 NR5A2O00482 541 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 TRIM38O00635 465 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 GPR32O75388 356 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 SBK3P0C264 359 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 PIRTP0C851 137 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 CPB1P15086 417 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 MYBPC1Q00872 1141 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 STX5Q13190 355 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 BTBD8Q5XKL5 378 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 CLEC14AQ86T13 490 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 HERC6Q8IVU3 1022 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 NUP93Q8N1F7 819 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 GRIN3AQ8TCU5 1115 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 OR51F1A6NGY5 319 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 SCNN1GP51170 649 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 SLC7A2P52569 658 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 UPF3AQ9H1J1 476 aaKnown RBP12.75□□□□□ -0.37
LIG1-201ENST00000263274 GDAP2Q9NXN4 497 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 NSMCE4AQ9NXX6 385 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 ZNF711Q9Y462 761 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 HEMK1Q9Y5R4 338 aaPredicted RBP12.75□□□□□ -0.37
LIG1-201ENST00000263274 LCTP09848 1927 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 ARHGAP10A1A4S6 786 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 TCAF2A6NFQ2 919 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 SDHDO14521 159 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 TADA2AO75478 443 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 ANXA9O76027 345 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 HMBSP08397 361 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 LRPAP1P30533 357 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 BRCC3P46736 316 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 DUSP28Q4G0W2 176 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 SDHAF4Q5VUM1 108 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 CUZD1Q86UP6 607 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 ZNF786Q8N393 782 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 METTL25Q8N6Q8 603 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms