RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 HIC2Q96JB3 615 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 SLC45A3Q96JT2 553 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 TNIP3Q96KP6 325 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 GBA3Q9H227 469 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 LIN28AQ9H9Z2 209 aaKnown RBP10.16□□□□□ -0.78
LIG3-201ENST00000262327 COMMD3-BMI1R4GMX3 469 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 TCAF2A6NFQ2 919 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 GPR32O75388 356 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 CYP2C9P11712 490 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 CDC42EP1Q00587 391 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 PTK2BQ14289 1009 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 FSCN1Q16658 493 aaKnown RBP10.16□□□□□ -0.78
LIG3-201ENST00000262327 ZFP28Q8NHY6 868 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 RP9Q8TA86 221 aaKnown RBP10.16□□□□□ -0.78
LIG3-201ENST00000262327 PDCD6IPQ8WUM4 868 aaKnown RBP10.16□□□□□ -0.78
LIG3-201ENST00000262327 LRTOMTQ8WZ04 291 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 ZNF512Q96ME7 567 aaPredicted RBP10.16□□□□□ -0.78
LIG3-201ENST00000262327 PRICKLE1Q96MT3 831 aaPredicted RBP10.16□□□□□ -0.78
LIG3-201ENST00000262327 HAPLN3Q96S86 360 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 FICDQ9BVA6 458 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 IL1RL2Q9HB29 575 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 TRPC7Q9HCX4 862 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 CRTAC1Q9NQ79 661 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 TMEM98Q9Y2Y6 226 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 NRCAMQ92823 1304 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 FAM95CA0A1B0GW59 222 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 E7ENX8 843 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 H3BSA7 217 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 SEPT4O43236 478 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 HNRNPRO43390 633 aaKnown RBP10.15□□□□□ -0.78
LIG3-201ENST00000262327 DDHD2O94830 711 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 PCSK6P29122 969 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 PSEN2P49810 448 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 TAS2R39P59534 338 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 PPIDQ08752 370 aaKnown RBP10.15□□□□□ -0.78
LIG3-201ENST00000262327 PDAP1Q13442 181 aaKnown RBP10.15□□□□□ -0.78
LIG3-201ENST00000262327 MFSD10Q14728 455 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 RBM20Q5T481 1227 aaKnown RBP10.15□□□□□ -0.78
LIG3-201ENST00000262327 ALKAL1Q6UXT8 129 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 NCSTNQ92542 709 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 EXT2Q93063 718 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 ISL2Q96A47 359 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 EME1Q96AY2 570 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 GPR22Q99680 433 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 SMOQ99835 787 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 CORO1BQ9BR76 489 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 POMKQ9H5K3 350 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 WDCPQ9H6R7 721 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 C6orf203Q9P0P8 240 aaPredicted RBP10.15□□□□□ -0.78
LIG3-201ENST00000262327 RCOR3Q9P2K3 495 aaPredicted RBP10.15□□□□□ -0.78
LIG3-201ENST00000262327 ACOT9Q9Y305 439 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 TTC24A2A3L6 582 aaPredicted RBP10.15□□□□□ -0.78
LIG3-201ENST00000262327 PRDX6P30041 224 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 PRMT2P55345 433 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 PRKAA1Q13131 559 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 BTG3Q14201 252 aaPredicted RBP10.15□□□□□ -0.78
LIG3-201ENST00000262327 METTL21CQ5VZV1 264 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 MYO1HQ8N1T3 1032 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 HEXDCQ8WVB3 486 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 NT5C3BQ969T7 300 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 TMIGD2Q96BF3 282 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 BTBD9Q96Q07 612 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 HNRNPABQ99729 332 aaKnown RBP10.15□□□□□ -0.78
LIG3-201ENST00000262327 ARPC5LQ9BPX5 153 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 MRPL1Q9BYD6 325 aaKnown RBP10.15□□□□□ -0.78
LIG3-201ENST00000262327 TRIM8Q9BZR9 551 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 OSBPL2Q9H1P3 480 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 EFCAB1Q9HAE3 211 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 SPC25Q9HBM1 224 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 ZBTB26Q9HCK0 441 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 NDFIP2Q9NV92 336 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 GMEB1Q9Y692 573 aa10.15□□□□□ -0.78
LIG3-201ENST00000262327 C7orf72A4D263 438 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 SLC1A2P43004 574 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 RPL34P49207 117 aaKnown RBP10.15□□□□□ -0.79
LIG3-201ENST00000262327 CXCR3P49682 368 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 DAOAP59103 153 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 NSUN2Q08J23 767 aaKnown RBP eCLIP10.15□□□□□ -0.79
LIG3-201ENST00000262327 CDH17Q12864 832 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 AGKQ53H12 422 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 ZNF470Q6ECI4 717 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 CLEC6AQ6EIG7 209 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 PGAM4Q8N0Y7 254 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 MARVELD2Q8N4S9 558 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 SMYD1Q8NB12 490 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 KDM1BQ8NB78 822 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 ZMIZ2Q8NF64 920 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 PXYLP1Q8TE99 480 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 STYXQ8WUJ0 223 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 PCED1BQ96HM7 432 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 TEKT5Q96M29 485 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 ZNF560Q96MR9 790 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 COLEC11Q9BWP8 271 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 IL22Q9GZX6 179 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 TRPV6Q9H1D0 765 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 RHOJQ9H4E5 214 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 COQ10BQ9H8M1 238 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 FBRSL1Q9HCM7 1045 aaKnown RBP10.15□□□□□ -0.79
LIG3-201ENST00000262327 GIMAP2Q9UG22 337 aa10.15□□□□□ -0.79
LIG3-201ENST00000262327 FBXW11Q9UKB1 542 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms