RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 LAMB3Q13751 1172 aa5.71□□□□□ -1.5
TOPBP1-201ENST00000260810 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.71□□□□□ -1.5
TOPBP1-201ENST00000260810 PLPP4Q5VZY2 271 aa5.71□□□□□ -1.5
TOPBP1-201ENST00000260810 TTC19Q6DKK2 380 aaPredicted RBP5.71□□□□□ -1.5
TOPBP1-201ENST00000260810 LAIR1Q6GTX8 287 aa5.71□□□□□ -1.5
TOPBP1-201ENST00000260810 ELMSAN1Q6PJG2 1045 aa5.71□□□□□ -1.5
TOPBP1-201ENST00000260810 TFAP2DQ7Z6R9 452 aa5.71□□□□□ -1.5
TOPBP1-201ENST00000260810 WDFY1Q8IWB7 410 aa5.71□□□□□ -1.5
TOPBP1-201ENST00000260810 APOL2Q9BQE5 337 aa5.71□□□□□ -1.5
TOPBP1-201ENST00000260810 EBF4Q9BQW3 602 aa5.71□□□□□ -1.5
TOPBP1-201ENST00000260810 SIRPGQ9P1W8 387 aa5.71□□□□□ -1.5
TOPBP1-201ENST00000260810 ADAM21Q9UKJ8 722 aa5.71□□□□□ -1.5
TOPBP1-201ENST00000260810 HS3ST2Q9Y278 367 aa5.71□□□□□ -1.5
TOPBP1-201ENST00000260810 TMEM233B4DJY2 109 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 URI1O94763 535 aaPredicted RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 EPPINO95925 133 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 KRT19P08727 400 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 GPD1P21695 349 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 IL12AP29459 219 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 MPP1Q00013 466 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 RNASELQ05823 741 aaKnown RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 GPR65Q8IYL9 337 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 PAF1Q8N7H5 531 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 RTL3Q8N8U3 475 aaKnown RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 ISG20Q96AZ6 181 aaKnown RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 IFT74Q96LB3 600 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 NKX2-4Q9H2Z4 354 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 IL26Q9NPH9 171 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 IGSF9Q9P2J2 1179 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 MTUS1Q9ULD2 1270 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 TRIM33Q9UPN9 1127 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 WASF3Q9UPY6 502 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 ABCA2Q9BZC7 2435 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 KBTBD13C9JR72 458 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 WISP2O76076 250 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 ALDOCP09972 364 aaKnown RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 MYZAPP0CAP1 466 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 CPB1P15086 417 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 TMEM196Q5HYL7 178 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 CYS1Q717R9 158 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 AMER3Q8N944 861 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 TTC17Q96AE7 1141 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 PABPC3Q9H361 631 aaKnown RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 TLR8Q9NR97 1041 aaKnown RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 ABI2Q9NYB9 513 aaPredicted RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 USP22Q9UPT9 525 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 BZW2Q9Y6E2 419 aaKnown RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 HEPACAM2A8MVW5 462 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 BUD23O43709 281 aaKnown RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 HAUS5O94927 633 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 RTN3O95197 1032 aaPredicted RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 IL9P15248 144 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 YWHAEP62258 255 aaKnown RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 DBPQ10586 325 aaPredicted RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 TYSND1Q2T9J0 566 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 FBXO48Q5FWF7 155 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 PIP5KL1Q5T9C9 394 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 ITIH5Q86UX2 942 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 KLHL7Q8IXQ5 586 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 EXOC8Q8IYI6 725 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 OR6B3Q8NGW1 331 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 ATOH8Q96SQ7 321 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 OMDQ99983 421 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 PHTF1Q9UMS5 762 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 FNDC3AQ9Y2H6 1198 aaKnown RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 PRAMEF27A3QJZ7 478 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 GOLGA8MH3BSY2 632 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 KLK8O60259 260 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 TLR5O60602 858 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 IGHV4-34P06331 123 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 MVDP53602 400 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 RAP1GAP2Q684P5 730 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 LAIR2Q6ISS4 152 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 CNSTQ6PJW8 725 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 WDR53Q7Z5U6 358 aaPredicted RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 ISCA2Q86U28 154 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 NUP93Q8N1F7 819 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 TMEM86AQ8N2M4 240 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 TAB3Q8N5C8 712 aaPredicted RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 FITM2Q8N6M3 262 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 PPM1EQ8WY54 764 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 SMARCD1Q96GM5 515 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 NSUN5Q96P11 429 aaKnown RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 RAD9AQ99638 391 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 IKZF5Q9H5V7 419 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 AFF4Q9UHB7 1163 aaKnown RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 A0A1B0GTW7 788 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 E2F8A0AVK6 867 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 C2CD4DB7Z1M9 353 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 ZNF189O75820 626 aaPredicted RBP5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 POU2F2P09086 479 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 ALPIP09923 528 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 TPH1P17752 444 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 NFKB1P19838 968 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 DUSP2Q05923 314 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 P3H1Q32P28 736 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 MBLAC2Q68D91 279 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 C1orf228Q6PIY5 440 aa5.7□□□□□ -1.5
TOPBP1-201ENST00000260810 FAM114A2Q9NRY5 505 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms