RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 AP1M2Q9Y6Q5 423 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 PTPRJQ12913 1337 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 A0A096LPK6 155 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 A0A1B0GVI7 797 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 INO80B-WBP1J3KQ70 363 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 PMM2O15305 246 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ATRNO75882 1429 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 APOC1P02654 83 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 S100A2P29034 98 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 HPCAL1P37235 193 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF235Q14590 738 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 CA9Q16790 459 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 PLA2G4EQ3MJ16 856 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 OTUD3Q5T2D3 398 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 FAM131AQ6UXB0 335 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 USP49Q70CQ1 688 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 SPARTQ8N0X7 666 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 STK40Q8N2I9 435 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 SPIRE2Q8WWL2 714 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 FEM1CQ96JP0 617 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 FAM86C1Q9NVL1 165 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 NXF1Q9UBU9 619 aaKnown RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 PP2D1A8MPX8 630 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF879B4DU55 563 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 SUPT3HB4E1H0 165 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 IRF6O14896 467 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 DDX3YO15523 660 aaKnown RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 DYNC1LI2O43237 492 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 NRP2O60462 931 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 NPHS1O60500 1241 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 MED24O75448 989 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 PIGNO95427 931 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ANGPTL1O95841 491 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 CALCAP01258 141 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 IL7P13232 177 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 PTGES3Q15185 160 aaKnown RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 RFTN2Q52LD8 501 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 OGFRL1Q5TC84 451 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 Q6ZNX1 250 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 C10orf107Q8IVU9 208 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 GATA6Q92908 595 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 MTMR10Q9NXD2 777 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 FEM1BQ9UK73 627 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 TESMINQ9Y4I5 508 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ZSCAN5BA6NJL1 495 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 SLC30A4O14863 429 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 BCKDKO14874 412 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 RPS6KA4O75676 772 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 OR7A10O76100 309 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 C6orf222P0C671 652 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 HSMCR30P0CW71 290 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ETFBP38117 255 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 MAPKAPK2P49137 400 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 NSUN2Q08J23 767 aaKnown RBP eCLIP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 PTPRNQ16849 979 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 DSELQ8IZU8 1212 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 UBR7Q8N806 425 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 CCDC107Q8WV48 283 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 BBS4Q96RK4 519 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 CGRRF1Q99675 332 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 SENP2Q9HC62 589 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 CMTM6Q9NX76 183 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF70Q9UC06 446 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 TESPA1A2RU30 521 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ANKDD1BA6NHY2 528 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 E7ENX8 843 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ARIH2O95376 493 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 CNPP09543 421 aaKnown RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 DBTP11182 482 aaKnown RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 GSTM5P46439 218 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 HLCSP50747 726 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 BCAMP50895 628 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PRR5LQ6MZQ0 368 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 CFAP206Q8IYR0 622 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ATP6V0D2Q8N8Y2 350 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ZFP28Q8NHY6 868 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 BSNDQ8WZ55 320 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 HTRA1Q92743 480 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 EBNA1BP2Q99848 306 aaKnown RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ACE2Q9BYF1 805 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 A3GALT2U3KPV4 340 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 RGS14O43566 566 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 WDPCPO95876 746 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 HLA-DRAP01903 254 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 CCNA1P78396 465 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PLA2G4FQ68DD2 849 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 HACD2Q6Y1H2 254 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 GLB1L3Q8NCI6 653 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 SLC20A1Q8WUM9 679 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 EXT2Q93063 718 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 AGAP3Q96P47 875 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF670Q9BS34 389 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 EIF2B3Q9NR50 452 aaKnown RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 NYAP2Q9P242 653 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 G3V2T6 193 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PLOD2O00469 737 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 EIF2DP41214 584 aaKnown RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 KLK7P49862 253 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms