RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SCARA3Q6AZY7 606 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 LRIG3Q6UXM1 1119 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 BNIPLQ7Z465 357 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SCUBE1Q8IWY4 988 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PARP8Q8N3A8 854 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 POC5Q8NA72 575 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TDRD5Q8NAT2 981 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF473Q8WTR7 871 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RBM18Q96H35 190 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 AIF1LQ9BQI0 150 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 MXD3Q9BW11 206 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 BARHL1Q9BZE3 327 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SAV1Q9H4B6 383 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 NEDD4P46934 1319 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CFTRP13569 1480 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 MBD5Q9P267 1494 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 GSG1L2A8MUP6 293 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 FDPSP14324 419 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RAP1GAPP47736 663 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RGS7P49802 495 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF135P52742 658 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CCZ1BP86790 482 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CCZ1P86791 482 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PPARAQ07869 468 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SEMA3AQ14563 771 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 UBXN2BQ14CS0 331 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TBRG1Q3YBR2 411 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ZFP69Q49AA0 526 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PYDC2Q56P42 97 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SMYD1Q8NB12 490 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SLAIN1Q8ND83 568 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF671Q8TAW3 534 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SPRYD4Q8WW59 207 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 DDX17Q92841 729 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 DNAJA3Q96EY1 480 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 UROC1Q96N76 676 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ACAT2Q9BWD1 397 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 OSBPL5Q9H0X9 879 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 VTA1Q9NP79 307 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TNFRSF10DQ9UBN6 386 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PCDHGB1Q9Y5G3 927 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 KDM5CP41229 1560 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TROQ12816 1431 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ISPDA4D126 451 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 OR14I1A6ND48 311 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ARP10275 920 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RRADP55042 308 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ERVK-21P61565 698 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PSMC5P62195 406 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SNRPFP62306 86 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 KCNC3Q14003 757 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 DNAJC24Q6P3W2 148 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CCNI2Q6ZMN8 369 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SMIM15Q7Z3B0 74 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RASGRP3Q8IV61 690 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 AP3S1Q92572 193 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PRCCQ92733 491 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 FOXJ1Q92949 421 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 BORCS5Q969J3 196 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CDCA5Q96FF9 252 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CRAMP1Q96RY5 1269 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RAB11FIP5Q9BXF6 653 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ATXN3LQ9H3M9 355 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 DSN1Q9H410 356 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PLEKHA1Q9HB21 404 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 GPRC5CQ9NQ84 441 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CFL2Q9Y281 166 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 WDR37Q9Y2I8 494 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ADAM18Q9Y3Q7 739 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TECTAO75443 2155 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM265A0A087WTH1 108 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SNNO75324 88 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ACTL6BO94805 426 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 LRIG2O94898 1065 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 OR56A5P0C7T3 313 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CHN1P15882 459 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 DNAJB2P25686 324 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PDHA2P29803 388 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 GPC3P51654 580 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 KCNQ4P56696 695 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 MRNIPQ6NTE8 343 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 BLOC1S3Q6QNY0 202 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TMC8Q8IU68 726 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 DIS3L2Q8IYB7 885 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ARL14Q8N4G2 192 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 LRRC17Q8N6Y2 441 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 HASPINQ8TF76 798 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ASB12Q8WXK4 309 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 AKAP1Q92667 903 aaKnown RBP eCLIP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 LMF2Q9BU23 707 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 BLZF1Q9H2G9 400 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PHF11Q9UIL8 331 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 NOP16Q9Y3C1 178 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PCDHB5Q9Y5E4 795 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CDY2AQ9Y6F7 541 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CDY1Q9Y6F8 540 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 USP42Q9H9J4 1324 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ATP10AO60312 1499 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SNAP23O00161 211 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TOR1BO14657 336 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms