RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 H0Y858 1186 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 GSSP48637 474 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 PPP1R15BQ5SWA1 713 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 ALKBH2Q6NS38 261 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 WDR93Q6P2C0 686 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 TSHZ1Q6ZSZ6 1077 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 GEMIN8Q9NWZ8 242 aaKnown RBP11.48□□□□□ -0.57
CLIP1-219ENST00000620786 SLC9A8Q9Y2E8 581 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 MC4RP32245 332 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 RAD23AP54725 363 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 GFM2Q969S9 779 aaKnown RBP11.48□□□□□ -0.57
CLIP1-219ENST00000620786 SIK3Q9Y2K2 1263 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 PCDHA2Q9Y5H9 948 aa11.48□□□□□ -0.57
CLIP1-219ENST00000620786 SMIM28A0A1B0GU29 152 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 FFAR3O14843 346 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 GPR42O15529 346 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 PRMT3O60678 531 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 NEK3P51956 506 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 EVX2Q03828 476 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 PTGR2Q8N8N7 351 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-219ENST00000620786 ATAD1Q8NBU5 361 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 WDR36Q8NI36 951 aaKnown RBP11.47□□□□□ -0.57
CLIP1-219ENST00000620786 ZNF670Q9BS34 389 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 TBCDQ9BTW9 1192 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 MRPS17Q9Y2R5 130 aaKnown RBP11.47□□□□□ -0.57
CLIP1-219ENST00000620786 TRIM71Q2Q1W2 868 aaKnown RBP11.47□□□□□ -0.57
CLIP1-219ENST00000620786 FUT10Q6P4F1 479 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 LBX2Q6XYB7 198 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 DHFR2Q86XF0 187 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 FAM71AQ8IYT1 594 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 GPR156Q8NFN8 814 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 OR14C36Q8NHC7 312 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 BSNDQ8WZ55 320 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 LRRC39Q96DD0 335 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 CAMTA1Q9Y6Y1 1673 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 FGRP09769 529 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 PTPN2P17706 415 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 FPGSQ05932 587 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 PTPRNQ16849 979 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 PHF13Q86YI8 300 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-219ENST00000620786 TBC1D23Q9NUY8 699 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 A0A0G2JLL6 359 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-219ENST00000620786 FAM25AB3EWG3 89 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 FAM25CB3EWG5 89 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 FAM25GB3EWG6 89 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 MDM4O15151 490 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 CLDN11O75508 207 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 ERBB2P04626 1255 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 VSTM1Q6UX27 236 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 GPR141Q7Z602 305 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 PRRT2Q7Z6L0 340 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-219ENST00000620786 SLC40A1Q9NP59 571 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 PHPT1Q9NRX4 125 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-219ENST00000620786 TRMT13Q9NUP7 481 aaKnown RBP11.47□□□□□ -0.57
CLIP1-219ENST00000620786 CCDC167Q9P0B6 97 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 ADAM30Q9UKF2 790 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 SLC25A12O75746 678 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 SPATA31C1P0DKV0 1188 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 FASP25445 335 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 FAM187BQ17R55 369 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 HYIQ5T013 277 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 BTN2A3PQ96KV6 586 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 TTLL2Q9BWV7 592 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 UGT2B28Q9BY64 529 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 PCDH12Q9NPG4 1184 aa11.47□□□□□ -0.57
CLIP1-219ENST00000620786 INTS7Q9NVH2 962 aaKnown RBP11.47□□□□□ -0.57
CLIP1-219ENST00000620786 CLUHO75153 1309 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 A0A1B0GW55 424 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 GTPBP1O00178 669 aaKnown RBP11.46□□□□□ -0.57
CLIP1-219ENST00000620786 CA12O43570 354 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 DUX4L2P0CJ85 424 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 DUX4L3P0CJ86 424 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 DUX4L4P0CJ87 422 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 DUX4L5P0CJ88 424 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 DUX4L6P0CJ89 424 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 DUX4L7P0CJ90 424 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 MAGEA10P43363 369 aaPredicted RBP11.46□□□□□ -0.57
CLIP1-219ENST00000620786 CLCNKBP51801 687 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 CDK18Q07002 472 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 C16orf46Q6P387 395 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 KLHL5Q96PQ7 755 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 KLHL1Q9NR64 748 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 DUX4Q9UBX2 424 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 KLHL3Q9UH77 587 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 LIASO43766 372 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 TSPAN1O60635 241 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 RASGRP1O95267 797 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 NQO1P15559 274 aaKnown RBP11.46□□□□□ -0.57
CLIP1-219ENST00000620786 POLD2P49005 469 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 NUP107P57740 925 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 TEAD4Q15561 434 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 AP5B1Q2VPB7 878 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 UNC5AQ6ZN44 842 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 ZBTB49Q6ZSB9 765 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 ZC3H7AQ8IWR0 971 aaKnown RBP11.46□□□□□ -0.57
CLIP1-219ENST00000620786 CAVIN3Q969G5 261 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 CERS2Q96G23 380 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 S100A13Q99584 98 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 PRDM12Q9H4Q4 367 aa11.46□□□□□ -0.57
CLIP1-219ENST00000620786 ERCC2P18074 760 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms