RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 EXOC2Q96KP1 924 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 CSPG4P5Q96PW8 444 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 ZDHHC5Q9C0B5 715 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 KDM4CQ9H3R0 1056 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 SP110Q9HB58 689 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 PDFQ9HBH1 243 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 PCDH18Q9HCL0 1135 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 PREBQ9HCU5 417 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 OSGEPQ9NPF4 335 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 KLHL11Q9NVR0 708 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 MFHAS1Q9Y4C4 1052 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 TMEM131Q92545 1883 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 PTPRBP23467 1997 aa16.24■□□□□ 0.19
BRCA1-228ENST00000618469 CELSR3Q9NYQ7 3312 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 C10orf142B7Z368 130 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 J3KR12 359 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 PRAMEF11O60813 436 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 UGT2B4P06133 528 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 HCAR3P49019 387 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 PAPOLAP51003 745 aaKnown RBP16.23■□□□□ 0.19
BRCA1-228ENST00000618469 NEK3P51956 506 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 CDH6P55285 790 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 TAS2R38P59533 333 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 BNC1Q01954 994 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 CCDC15Q0P6D6 951 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 TRIP6Q15654 476 aaKnown RBP16.23■□□□□ 0.19
BRCA1-228ENST00000618469 INO80DQ53TQ3 878 aaPredicted RBP16.23■□□□□ 0.19
BRCA1-228ENST00000618469 AFMIDQ63HM1 303 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 PARS2Q7L3T8 475 aaKnown RBP16.23■□□□□ 0.19
BRCA1-228ENST00000618469 POLNQ7Z5Q5 900 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 TRIM69Q86WT6 500 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 MRFAP1L1Q96HT8 127 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 HDAC8Q9BY41 377 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 EBF2Q9HAK2 575 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 AASDHPPTQ9NRN7 309 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 TPX2Q9ULW0 747 aaKnown RBP16.23■□□□□ 0.19
BRCA1-228ENST00000618469 RAXQ9Y2V3 346 aa16.23■□□□□ 0.19
BRCA1-228ENST00000618469 LATO43561 262 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 RNGTTO60942 597 aaKnown RBP16.22■□□□□ 0.19
BRCA1-228ENST00000618469 TRIM16O95361 564 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 CER1O95813 267 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 ADRB3P13945 408 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 AMPD1P23109 780 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 RACK1P63244 317 aaKnown RBP16.22■□□□□ 0.19
BRCA1-228ENST00000618469 TMCO3Q6UWJ1 677 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 ARHGAP36Q6ZRI8 547 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 TP53INP2Q8IXH6 220 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 PLPP6Q8IY26 295 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 CRELD1Q96HD1 420 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 SERAC1Q96JX3 654 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 OSBPL1AQ9BXW6 950 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 GAREM1Q9H706 876 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 ETNK2Q9NVF9 386 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 DNAAF2Q9NVR5 837 aaKnown RBP16.22■□□□□ 0.19
BRCA1-228ENST00000618469 LHX3Q9UBR4 397 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 LCMT1Q9UIC8 334 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 PCDHB9Q9Y5E1 797 aa16.22■□□□□ 0.19
BRCA1-228ENST00000618469 SETXQ7Z333 2677 aaKnown RBP16.21■□□□□ 0.19
BRCA1-228ENST00000618469 FAM221BA6H8Z2 402 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 UPK3BL1B0FP48 263 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 UPK3BL2E5RIL1 263 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 PCDH8O95206 1070 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 CD48P09326 243 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 FTH1P19P0C7X4 201 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 MAN1A1P33908 653 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 C21orf59P57076 290 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 TAS2R40P59535 323 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 RAD51Q06609 339 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 MESDQ14696 234 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 KIF19Q2TAC6 998 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 MYLK3Q32MK0 819 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 SETMARQ53H47 684 aaPredicted RBP16.21■□□□□ 0.19
BRCA1-228ENST00000618469 NAPEPLDQ6IQ20 393 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 FBXL19Q6PCT2 694 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 IL27RAQ6UWB1 636 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 PRPF39Q86UA1 669 aaKnown RBP16.21■□□□□ 0.19
BRCA1-228ENST00000618469 RHOT2Q8IXI1 618 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 LZTR1Q8N653 840 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 SLC35G2Q8TBE7 412 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 RFFLQ8WZ73 363 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 CCDC86Q9H6F5 360 aaKnown RBP16.21■□□□□ 0.19
BRCA1-228ENST00000618469 IL21RQ9HBE5 538 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 ANKRD6Q9Y2G4 727 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 FNDC3AQ9Y2H6 1198 aaKnown RBP16.21■□□□□ 0.19
BRCA1-228ENST00000618469 SNX11Q9Y5W9 270 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 IGSF10Q6WRI0 2623 aa16.21■□□□□ 0.19
BRCA1-228ENST00000618469 SMG1Q96Q15 3661 aaKnown RBP16.2■□□□□ 0.18
BRCA1-228ENST00000618469 A0A1W2PQU0 124 aa16.2■□□□□ 0.18
BRCA1-228ENST00000618469 GJB3O75712 270 aa16.2■□□□□ 0.18
BRCA1-228ENST00000618469 POP4O95707 220 aaKnown RBP16.2■□□□□ 0.18
BRCA1-228ENST00000618469 PRLRP16471 622 aa16.2■□□□□ 0.18
BRCA1-228ENST00000618469 SERPINB6P35237 376 aa16.2■□□□□ 0.18
BRCA1-228ENST00000618469 MMRN1Q13201 1228 aa16.2■□□□□ 0.18
BRCA1-228ENST00000618469 CYTH1Q15438 398 aa16.2■□□□□ 0.18
BRCA1-228ENST00000618469 ZNF423Q2M1K9 1284 aa16.2■□□□□ 0.18
BRCA1-228ENST00000618469 HLA-BQ31612 363 aa16.2■□□□□ 0.18
BRCA1-228ENST00000618469 ZNF805Q5CZA5 627 aa16.2■□□□□ 0.18
BRCA1-228ENST00000618469 ZFYVE27Q5T4F4 411 aa16.2■□□□□ 0.18
BRCA1-228ENST00000618469 GDPD4Q6W3E5 623 aa16.2■□□□□ 0.18
BRCA1-228ENST00000618469 SLCO6A1Q86UG4 719 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms