RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 NOD2Q9HC29 1040 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 COMMD8Q9NX08 183 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 CFAP97Q9P2B7 532 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 TXNDC16Q9P2K2 825 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 CDH22Q9UJ99 828 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 CHKBQ9Y259 395 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 PCDHGC4Q9Y5F7 938 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 LINC01553A4QN01 128 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 GREM1O60565 184 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 PRAMEF11O60813 436 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 EFCAB14O75071 495 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 KRT38O76015 456 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 PDHA1P08559 390 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 TSHRP16473 764 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 BGNP21810 368 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 ARNTP27540 789 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 GABRB3P28472 473 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 GKP32189 559 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 HTR7P34969 479 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 IRF9Q00978 393 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 MGAT5Q09328 741 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 ZNF789Q5FWF6 425 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 GKAP1Q5VSY0 366 aaPredicted RBP7.89□□□□□ -1.15
NEK3-207ENST00000617054 CES4AQ5XG92 561 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 FSTL4Q6MZW2 842 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 KDELC1Q6UW63 502 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 CCDC63Q8NA47 563 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 SPPL3Q8TCT6 385 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 BLOC1S5Q8TDH9 187 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 NSMCE1Q8WV22 266 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 ING5Q8WYH8 240 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 ZNF75CPQ92670 426 aaPredicted RBP7.89□□□□□ -1.15
NEK3-207ENST00000617054 CDKL2Q92772 493 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 FAM136AQ96C01 138 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 TMA16Q96EY4 203 aaKnown RBP7.89□□□□□ -1.15
NEK3-207ENST00000617054 TRMT2BQ96GJ1 504 aaKnown RBP7.89□□□□□ -1.15
NEK3-207ENST00000617054 CABS1Q96KC9 395 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 MAGEB18Q96M61 343 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 PITPNM3Q9BZ71 974 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 SLC25A51Q9H1U9 297 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 VPS11Q9H270 941 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 KLHL42Q9P2K6 505 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 FETUBQ9UGM5 382 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 ARL5AQ9Y689 179 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 ALPK3Q96L96 1907 aa7.89□□□□□ -1.15
NEK3-207ENST00000617054 BNIP3LO60238 219 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 USP1O94782 785 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 CA3P07451 260 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 PRSS56P0CW18 603 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 NPY2RP49146 381 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 GEMP55040 296 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 CDH4P55283 916 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 PDE1CQ14123 709 aaPredicted RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 SLC5A9Q2M3M2 681 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 PARP15Q460N3 678 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 SIRPB2Q5JXA9 342 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 CXorf57Q6NSI4 855 aaKnown RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 PTAR1Q7Z6K3 402 aaPredicted RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 TMC8Q8IU68 726 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 TNS4Q8IZW8 715 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 APCDD1Q8J025 514 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 PLD6Q8N2A8 252 aaKnown RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 ZNF276Q8N554 614 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 DCLK2Q8N568 766 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 C12orf76Q8N812 135 aaPredicted RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 MRPL43Q8N983 215 aaKnown RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 SGSM3Q96HU1 749 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 RPL10LQ96L21 214 aaKnown RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 APOL5Q9BWW9 433 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 IQCGQ9H095 443 aaKnown RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 RXFP1Q9HBX9 757 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 FNIP2Q9P278 1114 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 SOX13Q9UN79 622 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 SMG5Q9UPR3 1016 aaKnown RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 FCF1Q9Y324 198 aaKnown RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 MTF2Q9Y483 593 aaPredicted RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 ERI2A8K979 691 aaKnown RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 PEX14O75381 377 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 GLUD1P00367 558 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 AHSGP02765 367 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 ADH1AP07327 375 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 C7P10643 843 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 TYK2P29597 1187 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 SLC8A1P32418 973 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 PBX2P40425 430 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 OXCT1P55809 520 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 ZNF33AQ06730 810 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 IL10RBQ08334 325 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 RASA2Q15283 850 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 PCID2Q5JVF3 399 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 SPANXN3Q5MJ09 141 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 RABGAP1LQ5R372 815 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 ATXN7L2Q5T6C5 722 aaPredicted RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 PKN3Q6P5Z2 889 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 KLHDC10Q6PID8 442 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 LINC00523Q86TU6 105 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 NAT14Q8WUY8 206 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 OVCA2Q8WZ82 227 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 MRPS31Q92665 395 aaKnown RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 PLD4Q96BZ4 506 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms