RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 PRAMEF11O60813 436 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 NDUFA10O95299 355 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 CELA2BP08218 269 aaPredicted RBP5.78□□□□□ -1.48
CPNE3-208ENST00000614678 ALPIP09923 528 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 ADRB3P13945 408 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 PCK1P35558 622 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 NNMTP40261 264 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 MAGEA1P43355 309 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 ZBTB17Q13105 803 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 MYLK3Q32MK0 819 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 DENND2CQ68D51 928 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 PRUNE1Q86TP1 453 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 NIPA2Q8N8Q9 360 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 KCTD6Q8NC69 237 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 PDCD6IPQ8WUM4 868 aaKnown RBP5.78□□□□□ -1.48
CPNE3-208ENST00000614678 ALG3Q92685 438 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 MRFAP1L1Q96HT8 127 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 SERAC1Q96JX3 654 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 GAREM1Q9H706 876 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 NOD2Q9HC29 1040 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 MRPL47Q9HD33 250 aaKnown RBP5.78□□□□□ -1.48
CPNE3-208ENST00000614678 VPS45Q9NRW7 570 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 UBP1Q9NZI7 540 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 IP6K2Q9UHH9 426 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 CDV3Q9UKY7 258 aaKnown RBP5.78□□□□□ -1.48
CPNE3-208ENST00000614678 CAPN6Q9Y6Q1 641 aa5.78□□□□□ -1.48
CPNE3-208ENST00000614678 TARSL2A2RTX5 802 aaKnown RBP5.77□□□□□ -1.49
CPNE3-208ENST00000614678 PLRG1O43660 514 aaKnown RBP5.77□□□□□ -1.49
CPNE3-208ENST00000614678 RNGTTO60942 597 aaKnown RBP5.77□□□□□ -1.49
CPNE3-208ENST00000614678 PIRTP0C851 137 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 CD59P13987 128 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 TIMP2P16035 220 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 CTPS1P17812 591 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 GM2AP17900 193 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 KDELR1P24390 212 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 MAPKAPK2P49137 400 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 KRT83P78385 493 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 DSC2Q02487 901 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 SLC12A1Q13621 1099 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 PIGHQ14442 188 aaPredicted RBP5.77□□□□□ -1.49
CPNE3-208ENST00000614678 KRT81Q14533 505 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 ZNF284Q2VY69 593 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 PPM1JQ5JR12 505 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 SYCP2LQ5T4T6 812 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 KIAA0895LQ68EN5 471 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 SLC23A3Q6PIS1 610 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 TSPAN33Q86UF1 283 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 PLA2G15Q8NCC3 412 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 OR13H1Q8NG92 308 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 MAGEH1Q9H213 219 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 AASDHPPTQ9NRN7 309 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 DTLQ9NZJ0 730 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 ANKRD6Q9Y2G4 727 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 EPN1Q9Y6I3 576 aaPredicted RBP5.77□□□□□ -1.49
CPNE3-208ENST00000614678 ARHGEF17Q96PE2 2063 aaPredicted RBP5.77□□□□□ -1.49
CPNE3-208ENST00000614678 A0A1W2PPC4 97 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 ARHGAP33O14559 1287 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 FTCDO95954 541 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 TPM3P06753 285 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 MYBL1P10243 752 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 C5AR1P21730 350 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 TTC7BQ86TV6 843 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 CNGA4Q8IV77 575 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 TAB3Q8N5C8 712 aaPredicted RBP5.77□□□□□ -1.49
CPNE3-208ENST00000614678 CNTD1Q8N815 330 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 BMFQ96LC9 184 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 KLF6Q99612 283 aaPredicted RBP5.77□□□□□ -1.49
CPNE3-208ENST00000614678 HEPHQ9BQS7 1158 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 CHD6Q8TD26 2715 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 KIF26BQ2KJY2 2108 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 A0A1W2PR77 199 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 WASH4PA8MWX3 477 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 SERPINF2P08697 491 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 SULT2A1Q06520 285 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 NIPAL4Q0D2K0 466 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 TRAF2Q12933 501 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 DNAJC3Q13217 504 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 PEAR1Q5VY43 1037 aaPredicted RBP5.77□□□□□ -1.49
CPNE3-208ENST00000614678 RETSATQ6NUM9 610 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 ERN2Q76MJ5 926 aaKnown RBP5.77□□□□□ -1.49
CPNE3-208ENST00000614678 METTL3Q86U44 580 aaKnown RBP5.77□□□□□ -1.49
CPNE3-208ENST00000614678 VPS36Q86VN1 386 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 CCDC26Q8TAB7 109 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 ABCG8Q9H221 673 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 SUDS3Q9H7L9 328 aaPredicted RBP5.77□□□□□ -1.49
CPNE3-208ENST00000614678 NT5MQ9NPB1 228 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 UBA2Q9UBT2 640 aaPredicted RBP5.77□□□□□ -1.49
CPNE3-208ENST00000614678 CD84Q9UIB8 345 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 PCYT1BQ9Y5K3 369 aaPredicted RBP5.77□□□□□ -1.49
CPNE3-208ENST00000614678 FADS3Q9Y5Q0 445 aa5.77□□□□□ -1.49
CPNE3-208ENST00000614678 CACNA1BQ00975 2339 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 ACACAQ13085 2346 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 GRID2IPA4D2P6 1211 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 GPR39O43194 453 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 TTC31Q49AM3 519 aaPredicted RBP5.76□□□□□ -1.49
CPNE3-208ENST00000614678 TMCO3Q6UWJ1 677 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 GCNT7Q6ZNI0 430 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 DGLUCYQ7Z3D6 616 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 CCDC50Q8IVM0 306 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 SPATA22Q8NHS9 363 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms