RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 ADRA1DP25100 572 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 FDFT1P37268 417 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 ETFBP38117 255 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 SGSHP51688 502 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 CCNG1P51959 295 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 USP4Q13107 963 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 NAB1Q13506 487 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 SEMA5AQ13591 1074 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 EFTUD2Q15029 972 aaKnown RBP eCLIP11.87□□□□□ -0.513e-6■■□□□ 13.2
VRK3-223ENST00000601341 ZNF77Q15935 545 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 ANO4Q32M45 955 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 TEX44Q53QW1 395 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 ARHGAP36Q6ZRI8 547 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 CAPN12Q6ZSI9 719 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 KIAA1958Q8N8K9 716 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 DDI1Q8WTU0 396 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 DEPDC1BQ8WUY9 529 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 FGF13Q92913 245 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 FATE1Q969F0 183 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 OTUB2Q96DC9 234 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 ETNK1Q9HBU6 452 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 EIF2B3Q9NR50 452 aaKnown RBP11.87□□□□□ -0.51
VRK3-223ENST00000601341 ZC3H7BQ9UGR2 993 aaKnown RBP11.87□□□□□ -0.51
VRK3-223ENST00000601341 MTO1Q9Y2Z2 717 aaKnown RBP11.87□□□□□ -0.51
VRK3-223ENST00000601341 TTLL3Q9Y4R7 772 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 ATG2AQ2TAZ0 1938 aa11.87□□□□□ -0.51
VRK3-223ENST00000601341 DENND4CQ5VZ89 1909 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 H0Y626 953 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 SLC9A3R1O14745 358 aaPredicted RBP11.86□□□□□ -0.51
VRK3-223ENST00000601341 JCHAINP01591 159 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 KRT16P08779 473 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 PTPN3P26045 913 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 GNA12Q03113 381 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 SERINC3Q13530 473 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 CTC1Q2NKJ3 1217 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 POTEHQ6S545 545 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 ZNF783Q6ZMS7 281 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 TIFABQ6ZNK6 161 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 NLRP9Q7RTR0 991 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 PID1Q7Z2X4 250 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 CAND1Q86VP6 1230 aaKnown RBP11.86□□□□□ -0.51
VRK3-223ENST00000601341 ZNF354CQ86Y25 554 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 IGDCC3Q8IVU1 814 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 CCDC117Q8IWD4 279 aaPredicted RBP11.86□□□□□ -0.51
VRK3-223ENST00000601341 ZNF567Q8N184 647 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 GSDMBQ8TAX9 411 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 NSMCE1Q8WV22 266 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 SMARCD2Q92925 531 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 NAT9Q9BTE0 207 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 TSSK1BQ9BXA7 367 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 SP110Q9HB58 689 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 NOP53Q9NZM5 478 aaKnown RBP11.86□□□□□ -0.51
VRK3-223ENST00000601341 CLEC1BQ9P126 229 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 KLHL8Q9P2G9 620 aaPredicted RBP11.86□□□□□ -0.51
VRK3-223ENST00000601341 DOCK6Q96HP0 2047 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 NOTCH4Q99466 2003 aa11.86□□□□□ -0.51
VRK3-223ENST00000601341 FAM159BA6NKW6 160 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 LUC7L3O95232 432 aaKnown RBP11.85□□□□□ -0.51
VRK3-223ENST00000601341 IGFBP4P22692 258 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 RENBPP51606 427 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 IL10RBQ08334 325 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 CDH18Q13634 790 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 HNRNPDQ14103 355 aaKnown RBP11.85□□□□□ -0.51
VRK3-223ENST00000601341 FAM78AQ5JUQ0 283 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 IL31Q6EBC2 164 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 ITPRIPL1Q6GPH6 555 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 TPGS1Q6ZTW0 290 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 GET4Q7L5D6 327 aaPredicted RBP11.85□□□□□ -0.51
VRK3-223ENST00000601341 CARNMT1Q8N4J0 409 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 TAB3Q8N5C8 712 aaPredicted RBP11.85□□□□□ -0.51
VRK3-223ENST00000601341 RIN3Q8TB24 985 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 ACMSDQ8TDX5 336 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 SPOCK2Q92563 424 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 TEKT5Q96M29 485 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 RIPOR3Q96MK2 946 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 C7orf26Q96N11 449 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 ASB16Q96NS5 453 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 EBNA1BP2Q99848 306 aaKnown RBP11.85□□□□□ -0.51
VRK3-223ENST00000601341 CEP41Q9BYV8 373 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 S1PR5Q9H228 398 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 CLDND1Q9NY35 253 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 IGSF9Q9P2J2 1179 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 MCM8Q9UJA3 840 aa11.85□□□□□ -0.51
VRK3-223ENST00000601341 A0A0D9SEW6 157 aa11.84□□□□□ -0.51
VRK3-223ENST00000601341 BIRC5O15392 142 aa11.84□□□□□ -0.51
VRK3-223ENST00000601341 NEBLO76041 1014 aa11.84□□□□□ -0.51
VRK3-223ENST00000601341 ALDH1A2O94788 518 aa11.84□□□□□ -0.51
VRK3-223ENST00000601341 METTL18O95568 372 aa11.84□□□□□ -0.51
VRK3-223ENST00000601341 APRTP07741 180 aa11.84□□□□□ -0.51
VRK3-223ENST00000601341 PTPN4P29074 926 aa11.84□□□□□ -0.51
VRK3-223ENST00000601341 ACVRL1P37023 503 aa11.84□□□□□ -0.51
VRK3-223ENST00000601341 OXCT1P55809 520 aa11.84□□□□□ -0.51
VRK3-223ENST00000601341 ZBTB17Q13105 803 aa11.84□□□□□ -0.51
VRK3-223ENST00000601341 ADGRE1Q14246 886 aa11.84□□□□□ -0.51
VRK3-223ENST00000601341 KRT72Q14CN4 511 aa11.84□□□□□ -0.51
VRK3-223ENST00000601341 WASHC2DQ5SRD0 308 aa11.84□□□□□ -0.51
VRK3-223ENST00000601341 ATG16L1Q676U5 607 aa11.84□□□□□ -0.51
VRK3-223ENST00000601341 STEAP4Q687X5 459 aa11.84□□□□□ -0.51
VRK3-223ENST00000601341 CXorf57Q6NSI4 855 aaKnown RBP11.84□□□□□ -0.51
VRK3-223ENST00000601341 EP400NLQ6ZTU2 488 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms