RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 NCEH1Q6PIU2 408 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 GDPD4Q6W3E5 623 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 CNTD1Q8N815 330 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 TOE1Q96GM8 510 aaKnown RBP19.58■□□□□ 0.72
UPF1-209ENST00000600310 PPP1R16AQ96I34 528 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 PBKQ96KB5 322 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 WDR24Q96S15 920 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 POLR1EQ9GZS1 481 aaKnown RBP19.58■□□□□ 0.72
UPF1-209ENST00000600310 SGK2Q9HBY8 427 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 DYRK4Q9NR20 520 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 ATP8A1Q9Y2Q0 1164 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 SLC7A4O43246 635 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 GJB3O75712 270 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 RNASEH2AO75792 299 aaKnown RBP19.57■□□□□ 0.72
UPF1-209ENST00000600310 UGT2B4P06133 528 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 PTPN3P26045 913 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 NBL1P41271 181 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 CCDC15Q0P6D6 951 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 WASHC5Q12768 1159 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 CNTN1Q12860 1018 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 SIM2Q14190 667 aaPredicted RBP19.57■□□□□ 0.72
UPF1-209ENST00000600310 TEX44Q53QW1 395 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.57■□□□□ 0.72
UPF1-209ENST00000600310 CEP68Q76N32 757 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 FAM124AQ86V42 546 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 CDKL3Q8IVW4 592 aaPredicted RBP19.57■□□□□ 0.72
UPF1-209ENST00000600310 SLC35B2Q8TB61 432 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 HCAR2Q8TDS4 363 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 HTR3CQ8WXA8 447 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 NSMCE3Q96MG7 304 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 ZNF641Q96N77 438 aaPredicted RBP19.57■□□□□ 0.72
UPF1-209ENST00000600310 KLHL32Q96NJ5 620 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 SEMA3CQ99985 751 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 FAM118BQ9BPY3 351 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 HDAC8Q9BY41 377 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 FRMD8P1Q9BZ68 369 aaPredicted RBP19.57■□□□□ 0.72
UPF1-209ENST00000600310 BTBD1Q9H0C5 482 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 EPC1Q9H2F5 836 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 SEMA4AQ9H3S1 761 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 NOD2Q9HC29 1040 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 SCUBE2Q9NQ36 999 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 FAM86C1Q9NVL1 165 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 SEPT10Q9P0V9 454 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 DKK3Q9UBP4 350 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 SNX12Q9UMY4 172 aa19.57■□□□□ 0.72
UPF1-209ENST00000600310 R3HDM2Q9Y2K5 976 aaKnown RBP19.57■□□□□ 0.72
UPF1-209ENST00000600310 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.56■□□□□ 0.72
UPF1-209ENST00000600310 BCLAF3A2AJT9 711 aaKnown RBP19.56■□□□□ 0.72
UPF1-209ENST00000600310 PLK4O00444 970 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 PIGNO95427 931 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 CES1P23141 567 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 RBL1P28749 1068 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 ACSL1P33121 698 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 ITKQ08881 620 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 PIP5KL1Q5T9C9 394 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 AGBL4Q5VU57 503 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 ERN2Q76MJ5 926 aaKnown RBP19.56■□□□□ 0.72
UPF1-209ENST00000600310 CAMK1DQ8IU85 385 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 RASGEF1CQ8N431 466 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 ARRDC2Q8TBH0 407 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 MAIP1Q8WWC4 291 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 TRIM44Q96DX7 344 aaPredicted RBP19.56■□□□□ 0.72
UPF1-209ENST00000600310 ZC3H10Q96K80 434 aaKnown RBP19.56■□□□□ 0.72
UPF1-209ENST00000600310 OSBPL9Q96SU4 736 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 VAT1Q99536 393 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 SUV39H2Q9H5I1 410 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 ATP13A3Q9H7F0 1226 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 CACNA1HO95180 2353 aa19.56■□□□□ 0.72
UPF1-209ENST00000600310 TSPAN11A1L157 253 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 TTC24A2A3L6 582 aaPredicted RBP19.55■□□□□ 0.72
UPF1-209ENST00000600310 C16orf96A6NNT2 1141 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 MAP3K13O43283 966 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 NDUFS2O75306 463 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 ZNF189O75820 626 aaPredicted RBP19.55■□□□□ 0.72
UPF1-209ENST00000600310 FGGP02679 453 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 SERPINA4P29622 427 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 NEK3P51956 506 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 DSC2Q02487 901 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 BCL2L1Q07817 233 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 SIX1Q15475 284 aaPredicted RBP19.55■□□□□ 0.72
UPF1-209ENST00000600310 PLK5Q496M5 336 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 DARS2Q6PI48 645 aaKnown RBP19.55■□□□□ 0.72
UPF1-209ENST00000600310 PARS2Q7L3T8 475 aaKnown RBP19.55■□□□□ 0.72
UPF1-209ENST00000600310 ADAT2Q7Z6V5 191 aaKnown RBP19.55■□□□□ 0.72
UPF1-209ENST00000600310 ECHDC3Q96DC8 303 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 TEKT5Q96M29 485 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 AGAP3Q96P47 875 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 PHOX2BQ99453 314 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 FERMT1Q9BQL6 677 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 CEP41Q9BYV8 373 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 DUSP15Q9H1R2 295 aaPredicted RBP19.55■□□□□ 0.72
UPF1-209ENST00000600310 C10orf88Q9H8K7 445 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.55■□□□□ 0.72
UPF1-209ENST00000600310 TTC7AQ9ULT0 858 aaPredicted RBP19.55■□□□□ 0.72
UPF1-209ENST00000600310 ZKSCAN5Q9Y2L8 839 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 TTLL3Q9Y4R7 772 aa19.55■□□□□ 0.72
UPF1-209ENST00000600310 CES2O00748 559 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 TRAFD1O14545 582 aaPredicted RBP19.54■□□□□ 0.72
UPF1-209ENST00000600310 SOCS5O75159 536 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 RHOBTB1O94844 696 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms