RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 GPR27Q9NS67 375 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 KLK13Q9UKR3 277 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 KNTC1P50748 2209 aa12.33□□□□□ -0.44
LIG1-217ENST00000599165 FAM221BA6H8Z2 402 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 C1QTNF9BB2RNN3 333 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 PRAMEF26H0Y7S4 382 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 KRIT1O00522 736 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 MUSKO15146 869 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 PRPSAP2O60256 369 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 RNF8O76064 485 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 POP4O95707 220 aaKnown RBP12.32□□□□□ -0.44
LIG1-217ENST00000599165 PEX11BO96011 259 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 ATXN1LP0C7T5 689 aaKnown RBP12.32□□□□□ -0.44
LIG1-217ENST00000599165 C1QTNF9P0C862 333 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 RARAP10276 462 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 IL4RP24394 825 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 EPHA8P29322 1005 aaPredicted RBP12.32□□□□□ -0.44
LIG1-217ENST00000599165 NUDT1P36639 197 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 EIF4A3P38919 411 aaKnown RBP12.32□□□□□ -0.44
LIG1-217ENST00000599165 RXRGP48443 463 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 HCAR3P49019 387 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 ARSEP51690 589 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 CLDN2P57739 230 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 SNRPD1P62314 119 aaKnown RBP12.32□□□□□ -0.44
LIG1-217ENST00000599165 BNIP3Q12983 259 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 HNRNPDQ14103 355 aaKnown RBP12.32□□□□□ -0.44
LIG1-217ENST00000599165 SETMARQ53H47 684 aaPredicted RBP12.32□□□□□ -0.44
LIG1-217ENST00000599165 PPP6R3Q5H9R7 873 aaPredicted RBP12.32□□□□□ -0.44
LIG1-217ENST00000599165 TPRG1LQ5T0D9 272 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 POLNQ7Z5Q5 900 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 ABI3BPQ7Z7G0 1075 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 ZSWIM9Q86XI8 627 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 CHCHD4Q8N4Q1 142 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 RNF214Q8ND24 703 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 OR13H1Q8NG92 308 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 SETD7Q8WTS6 366 aaKnown RBP12.32□□□□□ -0.44
LIG1-217ENST00000599165 CASKIN2Q8WXE0 1202 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 ADAMTS14Q8WXS8 1223 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 PPP1R16AQ96I34 528 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 LRIG1Q96JA1 1093 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 BMFQ96LC9 184 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 GDAP1L1Q96MZ0 367 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 KLHL32Q96NJ5 620 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 NUP85Q9BW27 656 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 C1QTNF2Q9BXJ5 285 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 TSPY26PQ9H489 355 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 ERVMER34-1Q9H9K5 563 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 MRPL47Q9HD33 250 aaKnown RBP12.32□□□□□ -0.44
LIG1-217ENST00000599165 DYRK4Q9NR20 520 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 HPCAL4Q9UM19 191 aa12.32□□□□□ -0.44
LIG1-217ENST00000599165 LRP4O75096 1905 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 TSPAN11A1L157 253 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 POM121BA6NF01 834 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 BUB1BO60566 1050 aaPredicted RBP12.31□□□□□ -0.44
LIG1-217ENST00000599165 PCDH8O95206 1070 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 PIGNO95427 931 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 CD48P09326 243 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 GIMD1P0DJR0 217 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 TIMP2P16035 220 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 HNRNPA2B1P22626 353 aaKnown RBP12.31□□□□□ -0.44
LIG1-217ENST00000599165 AMPD1P23109 780 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 RHOAP61586 193 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 ACAP1Q15027 740 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 CCDC122Q5T0U0 273 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 SPECC1LQ69YQ0 1117 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 FBXL19Q6PCT2 694 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 GDPD4Q6W3E5 623 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 ZNF354CQ86Y25 554 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 RYBPQ8N488 228 aaPredicted RBP12.31□□□□□ -0.44
LIG1-217ENST00000599165 FAM71BQ8TC56 605 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 RHBDD1Q8TEB9 315 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 CSPG4P5Q96PW8 444 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 CHP1Q99653 195 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 ZWILCHQ9H900 591 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 PCDH18Q9HCL0 1135 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 GDF3Q9NR23 364 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 UBA2Q9UBT2 640 aaPredicted RBP12.31□□□□□ -0.44
LIG1-217ENST00000599165 ANAPC7Q9UJX3 599 aa12.31□□□□□ -0.44
LIG1-217ENST00000599165 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.31□□□□□ -0.442e-7■■□□□ 13.1
LIG1-217ENST00000599165 IGLON5A6NGN9 336 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 DFNA5O60443 496 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 IGSF6O95976 241 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 PAK4O96013 591 aaPredicted RBP12.3□□□□□ -0.44
LIG1-217ENST00000599165 CAPNS1P04632 268 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 GRK6P43250 576 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 TAS2R40P59535 323 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 RPS21P63220 83 aaKnown RBP12.3□□□□□ -0.44
LIG1-217ENST00000599165 OVGP1Q12889 678 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 MAPK8IP2Q13387 824 aaPredicted RBP12.3□□□□□ -0.44
LIG1-217ENST00000599165 PIGHQ14442 188 aaPredicted RBP12.3□□□□□ -0.44
LIG1-217ENST00000599165 STAT4Q14765 748 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 NFKBIBQ15653 356 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 SLC18A3Q16572 532 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 ATP13A4Q4VNC1 1196 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 KIAA1161Q6NSJ0 714 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 TSEN2Q8NCE0 465 aaKnown RBP12.3□□□□□ -0.44
LIG1-217ENST00000599165 TEKT4Q8WW24 435 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 HSPH1Q92598 858 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 OSBPL1AQ9BXW6 950 aa12.3□□□□□ -0.44
LIG1-217ENST00000599165 SLC17A9Q9BYT1 436 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms