RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 PTPN20Q4JDL3 420 aa16.75■□□□□ 0.27
SHKBP1-215ENST00000597649 KIAA1161Q6NSJ0 714 aa16.75■□□□□ 0.27
SHKBP1-215ENST00000597649 FOXR1Q6PIV2 292 aa16.75■□□□□ 0.27
SHKBP1-215ENST00000597649 RBM44Q6ZP01 1051 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-215ENST00000597649 PARS2Q7L3T8 475 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-215ENST00000597649 SLC26A9Q7LBE3 791 aa16.75■□□□□ 0.27
SHKBP1-215ENST00000597649 RBFAQ8N0V3 343 aa16.75■□□□□ 0.27
SHKBP1-215ENST00000597649 NT5C3BQ969T7 300 aa16.75■□□□□ 0.27
SHKBP1-215ENST00000597649 LENG8Q96PV6 779 aaPredicted RBP16.75■□□□□ 0.27
SHKBP1-215ENST00000597649 SPON2Q9BUD6 331 aa16.75■□□□□ 0.27
SHKBP1-215ENST00000597649 BOCQ9BWV1 1114 aa16.75■□□□□ 0.27
SHKBP1-215ENST00000597649 EVA1BQ9NVM1 165 aa16.75■□□□□ 0.27
SHKBP1-215ENST00000597649 APEX2Q9UBZ4 518 aa16.75■□□□□ 0.27
SHKBP1-215ENST00000597649 GGT7Q9UJ14 662 aa16.75■□□□□ 0.27
SHKBP1-215ENST00000597649 PCDHGC3Q9UN70 934 aa16.75■□□□□ 0.27
SHKBP1-215ENST00000597649 IGLV3-10A0A075B6K4 115 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 TEX33O43247 280 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 AP1G1O43747 822 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 CD160O95971 181 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 OR1E1P30953 314 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 GKP32189 559 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 RNASE9P60153 205 aaKnown RBP16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 PFN3P60673 137 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 C1orf61Q13536 156 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 NR1I3Q14994 352 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 NR0B2Q15466 257 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 ARL13BQ3SXY8 428 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 CARD16Q5EG05 197 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 ENOSF1Q7L5Y1 443 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 CLEC14AQ86T13 490 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 SLC35F3Q8IY50 421 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 EXD3Q8N9H8 876 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 ZNF397Q8NF99 534 aaPredicted RBP16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 NEK11Q8NG66 645 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 SHC3Q92529 594 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 GRAMD1AQ96CP6 724 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 PPP1R16AQ96I34 528 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 ERGIC2Q96RQ1 377 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 HEPHQ9BQS7 1158 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 TRIM5Q9C035 493 aa16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 IPO11Q9UI26 975 aaKnown RBP16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 AJAP1Q9UKB5 411 aaPredicted RBP16.74■□□□□ 0.27
SHKBP1-215ENST00000597649 ILVBLA1L0T0 632 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 H3BM21 787 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 FPGTO14772 594 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 TPP1O14773 563 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 SLC28A2O43868 658 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 TNFSF15O95150 251 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 WISP1O95388 367 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 ABL2P42684 1182 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 RECQLP46063 649 aaPredicted RBP16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 SERPINH1P50454 418 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 DNA2P51530 1060 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 CCNHP51946 323 aaPredicted RBP16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 ADKP55263 362 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 ARF5P84085 180 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 BRMS1LQ5PSV4 323 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 KLHDC7AQ5VTJ3 777 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 CCDC81Q6ZN84 652 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 TPCN2Q8NHX9 752 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 C1orf74Q96LT6 269 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 TBCBQ99426 244 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 IL12RB2Q99665 862 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 XPO4Q9C0E2 1151 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 PLCB1Q9NQ66 1216 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 FAM207AQ9NSI2 230 aaPredicted RBP16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 NCKIPSDQ9NZQ3 722 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 DNAJC12Q9UKB3 198 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 ITM2BQ9Y287 266 aa16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 FCF1Q9Y324 198 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-215ENST00000597649 SRGAP2O75044 1071 aa16.72■□□□□ 0.27
SHKBP1-215ENST00000597649 TCEA3O75764 348 aa16.72■□□□□ 0.27
SHKBP1-215ENST00000597649 KLK7P49862 253 aa16.72■□□□□ 0.27
SHKBP1-215ENST00000597649 SLC20A2Q08357 652 aa16.72■□□□□ 0.27
SHKBP1-215ENST00000597649 SGCGQ13326 291 aa16.72■□□□□ 0.27
SHKBP1-215ENST00000597649 PCDH20Q8N6Y1 951 aaKnown RBP16.72■□□□□ 0.27
SHKBP1-215ENST00000597649 WDR36Q8NI36 951 aaKnown RBP16.72■□□□□ 0.27
SHKBP1-215ENST00000597649 CENPTQ96BT3 561 aa16.72■□□□□ 0.27
SHKBP1-215ENST00000597649 PGAP3Q96FM1 320 aaPredicted RBP16.72■□□□□ 0.27
SHKBP1-215ENST00000597649 CEP44Q9C0F1 390 aa16.72■□□□□ 0.27
SHKBP1-215ENST00000597649 CLPBQ9H078 707 aa16.72■□□□□ 0.27
SHKBP1-215ENST00000597649 SIX2Q9NPC8 291 aa16.72■□□□□ 0.27
SHKBP1-215ENST00000597649 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.72■□□□□ 0.27
SHKBP1-215ENST00000597649 SIK3Q9Y2K2 1263 aa16.72■□□□□ 0.27
SHKBP1-215ENST00000597649 A0A1W2PQC6 194 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 FAM170AA1A519 330 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 C16orf96A6NNT2 1141 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 NTN3O00634 580 aaPredicted RBP16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 YY2O15391 372 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 ARHGAP6O43182 974 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 CELA2BP08218 269 aaPredicted RBP16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 PNMA6AP0CW24 399 aaPredicted RBP16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 CLCN1P35523 988 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 SULT1E1P49888 294 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 DEUP1Q05D60 604 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 RAPGEF1Q13905 1077 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 LINC00303Q3SY05 128 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 PRRT3Q5FWE3 981 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 TRNP1Q6NT89 227 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 SARM1Q6SZW1 724 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms