RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SETD3Q86TU7 594 aaPredicted RBP9.94□□□□□ -0.82
LIG3-216ENST00000593099 MRPL43Q8N983 215 aaKnown RBP9.94□□□□□ -0.82
LIG3-216ENST00000593099 AGR3Q8TD06 166 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 LRRN4Q8WUT4 740 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 SMARCD2Q92925 531 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 RPL10LQ96L21 214 aaKnown RBP9.94□□□□□ -0.82
LIG3-216ENST00000593099 DCDC2Q9UHG0 476 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 CD207Q9UJ71 328 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 RUVBL2Q9Y230 463 aaKnown RBP9.94□□□□□ -0.82
LIG3-216ENST00000593099 ANP32DO95626 131 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 PTPN7P35236 360 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 LRRC32Q14392 662 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 GRM2Q14416 872 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 GALNT3Q14435 633 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 LY6G5CQ5SRR4 150 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 TMEM240Q5SV17 173 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 CMTM8Q8IZV2 173 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 PNKPQ96T60 521 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 ZDHHC4Q9NPG8 344 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 PHPT1Q9NRX4 125 aaPredicted RBP9.94□□□□□ -0.82
LIG3-216ENST00000593099 AKAP7Q9P0M2 348 aaPredicted RBP9.94□□□□□ -0.82
LIG3-216ENST00000593099 ZNF711Q9Y462 761 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 GRIN2DO15399 1336 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 ECT2LQ008S8 904 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 MGAT3Q09327 533 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 PEX6Q13608 980 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 GRTP1Q5TC63 336 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 ZCCHC9Q8N567 271 aaKnown RBP9.94□□□□□ -0.82
LIG3-216ENST00000593099 MCOLN3Q8TDD5 553 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 KBTBD7Q8WVZ9 684 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 PRCCQ92733 491 aaPredicted RBP9.94□□□□□ -0.82
LIG3-216ENST00000593099 ELAC2Q9BQ52 826 aaKnown RBP9.94□□□□□ -0.82
LIG3-216ENST00000593099 SLC25A51Q9H1U9 297 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 WDR6Q9NNW5 1121 aaKnown RBP9.94□□□□□ -0.82
LIG3-216ENST00000593099 KCND1Q9NSA2 647 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 MRGBPQ9NV56 204 aa9.94□□□□□ -0.82
LIG3-216ENST00000593099 EPCAMP16422 314 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 CXCR3P49682 368 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 ZNF132P52740 706 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 RFTN1Q14699 578 aaPredicted RBP9.93□□□□□ -0.82
LIG3-216ENST00000593099 SHHQ15465 462 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 SH3PXD2AQ5TCZ1 1133 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 LYPLAL1Q5VWZ2 237 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 TRIM68Q6AZZ1 485 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 TDHQ8IZJ6 230 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 AHI1Q8N157 1196 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 THOC1Q96FV9 657 aaKnown RBP9.93□□□□□ -0.82
LIG3-216ENST00000593099 LRGUKQ96M69 825 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 NPY6RQ99463 290 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 EBF3Q9H4W6 596 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 LZTS1Q9Y250 596 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 FCF1Q9Y324 198 aaKnown RBP9.93□□□□□ -0.82
LIG3-216ENST00000593099 GSTA4O15217 222 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 COCHO43405 550 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 TPP2P29144 1249 aaPredicted RBP9.93□□□□□ -0.82
LIG3-216ENST00000593099 CDH5P33151 784 aaPredicted RBP9.93□□□□□ -0.82
LIG3-216ENST00000593099 ATP6V1E1P36543 226 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 MAPK9P45984 424 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 TTPAP49638 278 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 NAB1Q13506 487 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 CSHL1Q14406 222 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 ZDHHC20Q5W0Z9 365 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 NANOGNBQ7Z5D8 188 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 SRLQ86TD4 932 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 PSMG2Q969U7 264 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 QKIQ96PU8 341 aaKnown RBP eCLIP9.93□□□□□ -0.82
LIG3-216ENST00000593099 CPNE1Q99829 537 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 ZNF576Q9H609 170 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 BPIFA1Q9NP55 256 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 NMRK1Q9NWW6 199 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 FNIP2Q9P278 1114 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 TBC1D30Q9Y2I9 924 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 RGPD3A6NKT7 1758 aaPredicted RBP9.93□□□□□ -0.82
LIG3-216ENST00000593099 RGPD4Q7Z3J3 1758 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 BCLAF3A2AJT9 711 aaKnown RBP9.93□□□□□ -0.82
LIG3-216ENST00000593099 ZNF840PA6NDX5 716 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 CATP04040 527 aaKnown RBP9.93□□□□□ -0.82
LIG3-216ENST00000593099 EDN1P05305 212 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 CDK7P50613 346 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 ARFIP2P53365 341 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 FAM189BP81408 668 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 TMEM139Q8IV31 216 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 SYTL1Q8IYJ3 562 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 AHCYL2Q96HN2 611 aaKnown RBP9.93□□□□□ -0.82
LIG3-216ENST00000593099 KXD1Q9BQD3 176 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 SMG9Q9H0W8 520 aaKnown RBP9.93□□□□□ -0.82
LIG3-216ENST00000593099 KDM4CQ9H3R0 1056 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 ZFYVE1Q9HBF4 777 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 DCTN4Q9UJW0 460 aa9.93□□□□□ -0.82
LIG3-216ENST00000593099 C5orf60A6NFR6 353 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 KPNA5O15131 536 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 DDX3YO15523 660 aaKnown RBP9.92□□□□□ -0.82
LIG3-216ENST00000593099 SUPT7LO94864 414 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 CD48P09326 243 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 TYRP14679 529 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 KRT4P19013 534 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 SSTR1P30872 391 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 FMO4P31512 558 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 TIE1P35590 1138 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 HCAR3P49019 387 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms