RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 TRAV19A0A0A6YYK7 116 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 TCRBV5S1A1TA0A578 114 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 ATP8B1O43520 1251 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 PHF2O75151 1096 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 FBXO21O94952 628 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 HEXIM1O94992 359 aaKnown RBP10.53□□□□□ -0.72
SS18-221ENST00000582448 GJB6O95452 261 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 PF4P02776 101 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 CKMP06732 381 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 LCP1P13796 627 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 PDGFRAP16234 1089 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 CSRP1P21291 193 aaKnown RBP10.53□□□□□ -0.72
SS18-221ENST00000582448 ACAT1P24752 427 aaKnown RBP10.53□□□□□ -0.72
SS18-221ENST00000582448 CYP2F1P24903 491 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 MARCKSL1P49006 195 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 ZNF143P52747 638 aaPredicted RBP10.53□□□□□ -0.72
SS18-221ENST00000582448 RPL6Q02878 288 aaKnown RBP10.53□□□□□ -0.72
SS18-221ENST00000582448 SMARCB1Q12824 385 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 TRIM61Q5EBN2 209 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 DCAF12L1Q5VU92 463 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 PMF1Q6P1K2 205 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 C4orf50Q6ZRC1 276 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 FAM183BPQ6ZVS7 135 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 OSTM1Q86WC4 334 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 SLC13A5Q86YT5 568 aaPredicted RBP10.53□□□□□ -0.72
SS18-221ENST00000582448 SCN4BQ8IWT1 228 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 TMEFF1Q8IYR6 380 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 MYCBPAPQ8TBZ2 947 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 OSCP1Q8WVF1 389 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.53□□□□□ -0.726e-8■■■■□ 26.7
SS18-221ENST00000582448 HRASLS5Q96KN8 279 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 SLC22A12Q96S37 553 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 NUSAP1Q9BXS6 441 aaKnown RBP10.53□□□□□ -0.72
SS18-221ENST00000582448 ACBD3Q9H3P7 528 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 SLC32A1Q9H598 525 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 WASF3Q9UPY6 502 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 ABCA7Q8IZY2 2146 aa10.52□□□□□ -0.72
SS18-221ENST00000582448 SPAARA0A1B0GVQ0 90 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 TMEM8BA6NDV4 472 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 F8VP50 259 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 PRPSAP2O60256 369 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 TJP3O95049 919 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 PGRP06401 933 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 PCK1P35558 622 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 DR1Q01658 176 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 GUCY2DQ02846 1103 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 GPS2Q13227 327 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 CAMK2GQ13555 558 aaPredicted RBP10.52□□□□□ -0.73
SS18-221ENST00000582448 CUL1Q13616 776 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 ZNF77Q15935 545 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 OLFML1Q6UWY5 402 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 ARCQ7LC44 396 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 ADAT2Q7Z6V5 191 aaKnown RBP10.52□□□□□ -0.73
SS18-221ENST00000582448 C11orf74Q86VG3 221 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 MAP7D3Q8IWC1 876 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 DEFB119Q8N690 84 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 EMC1Q8N766 993 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 FRMD1Q8N878 549 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 MFSD2AQ8NA29 543 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 KCTD6Q8NC69 237 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 MDGA1Q8NFP4 955 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 JOSD2Q8TAC2 188 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 SH3RF2Q8TEC5 729 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 USP33Q8TEY7 942 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 GRK7Q8WTQ7 553 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 RXFP2Q8WXD0 754 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 KCTD13Q8WZ19 329 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 MAGOHBQ96A72 148 aaKnown RBP10.52□□□□□ -0.73
SS18-221ENST00000582448 SMARCD1Q96GM5 515 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 RHOVQ96L33 236 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 PNKPQ96T60 521 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 TRIM62Q9BVG3 475 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 UBXN6Q9BZV1 441 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 FSCN3Q9NQT6 498 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 BCCIPQ9P287 314 aaKnown RBP eCLIP10.52□□□□□ -0.73
SS18-221ENST00000582448 UXTQ9UBK9 157 aaPredicted RBP10.52□□□□□ -0.73
SS18-221ENST00000582448 KLK13Q9UKR3 277 aa10.52□□□□□ -0.73
SS18-221ENST00000582448 NUP210Q8TEM1 1887 aaPredicted RBP10.51□□□□□ -0.73
SS18-221ENST00000582448 FAM221AA4D161 298 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 LRRD1A4D1F6 860 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 C2orf78A6NCI8 922 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 K7EQS6 105 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 SCAMP3O14828 347 aaKnown RBP10.51□□□□□ -0.73
SS18-221ENST00000582448 HSF2BPO75031 334 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 ATP2C2O75185 946 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 ALDH1A2O94788 518 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 GAS8O95995 478 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 CFIP05156 583 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 GLI1P08151 1106 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 HDCP19113 662 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 TNFRSF8P28908 595 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 TNNT3P45378 269 aaPredicted RBP10.51□□□□□ -0.73
SS18-221ENST00000582448 FNTAP49354 379 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 ATXN3P54252 364 aaPredicted RBP10.51□□□□□ -0.73
SS18-221ENST00000582448 MAP3K7CLP57077 242 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 TAS2R40P59535 323 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 VSNL1P62760 191 aa10.51□□□□□ -0.73
SS18-221ENST00000582448 RPL10AP62906 217 aaKnown RBP10.51□□□□□ -0.73
SS18-221ENST00000582448 SIM1P81133 766 aaPredicted RBP10.51□□□□□ -0.73
SS18-221ENST00000582448 LMAN2Q12907 356 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms