RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 GLUD2P49448 558 aa6.64□□□□□ -1.35
SS18-214ENST00000580003 TLE2Q04725 743 aa6.64□□□□□ -1.35
SS18-214ENST00000580003 LPIN1Q14693 890 aa6.64□□□□□ -1.35
SS18-214ENST00000580003 TDRD12Q587J7 1177 aaKnown RBP6.64□□□□□ -1.35
SS18-214ENST00000580003 UBAP2Q5T6F2 1119 aaKnown RBP6.64□□□□□ -1.35
SS18-214ENST00000580003 MEPCEQ7L2J0 689 aaKnown RBP6.64□□□□□ -1.35
SS18-214ENST00000580003 MON1AQ86VX9 555 aa6.64□□□□□ -1.35
SS18-214ENST00000580003 LURAP1LQ8IV03 231 aa6.64□□□□□ -1.35
SS18-214ENST00000580003 DENND6AQ8IWF6 608 aa6.64□□□□□ -1.35
SS18-214ENST00000580003 ADAMTS15Q8TE58 950 aa6.64□□□□□ -1.35
SS18-214ENST00000580003 USP13Q92995 863 aaPredicted RBP6.64□□□□□ -1.35
SS18-214ENST00000580003 PHF21BQ96EK2 531 aa6.64□□□□□ -1.35
SS18-214ENST00000580003 PHF7Q9BWX1 381 aaPredicted RBP6.64□□□□□ -1.35
SS18-214ENST00000580003 GPR63Q9BZJ6 419 aa6.64□□□□□ -1.35
SS18-214ENST00000580003 CDT1Q9H211 546 aa6.64□□□□□ -1.35
SS18-214ENST00000580003 IL1RAPL1Q9NZN1 696 aa6.64□□□□□ -1.35
SS18-214ENST00000580003 HSF4Q9ULV5 492 aa6.64□□□□□ -1.35
SS18-214ENST00000580003 SOX30O94993 753 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 TFPIP10646 304 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 HOXB6P17509 224 aaKnown RBP6.63□□□□□ -1.35
SS18-214ENST00000580003 MYF6P23409 242 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 AMTP48728 403 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 FAM27E3Q08E93 113 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 TRPC3Q13507 836 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 RUNX2Q13950 521 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 MYBPC2Q14324 1141 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 GORABQ5T7V8 394 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 C17orf99Q6UX52 265 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 SPATA2LQ8IUW3 424 aaPredicted RBP6.63□□□□□ -1.35
SS18-214ENST00000580003 ADAMTS14Q8WXS8 1223 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 OTULINQ96BN8 352 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 MED30Q96HR3 178 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 YME1L1Q96TA2 773 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 TMEM160Q9NX00 188 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 SELENONQ9NZV5 590 aa6.63□□□□□ -1.35
SS18-214ENST00000580003 GOLGA6L10A0A0M3HER8 536 aa6.62□□□□□ -1.35
SS18-214ENST00000580003 EBAG9O00559 213 aa6.62□□□□□ -1.35
SS18-214ENST00000580003 POLBP06746 335 aa6.62□□□□□ -1.35
SS18-214ENST00000580003 ZNF8P17098 575 aaPredicted RBP6.62□□□□□ -1.35
SS18-214ENST00000580003 SHBQ15464 509 aa6.62□□□□□ -1.35
SS18-214ENST00000580003 RUSC1-AS1Q66K80 236 aa6.62□□□□□ -1.35
SS18-214ENST00000580003 C8orf82Q6P1X6 216 aaPredicted RBP6.62□□□□□ -1.35
SS18-214ENST00000580003 SLC22A25Q6T423 547 aa6.62□□□□□ -1.35
SS18-214ENST00000580003 MOB3CQ70IA8 216 aa6.62□□□□□ -1.35
SS18-214ENST00000580003 FJX1Q86VR8 437 aa6.62□□□□□ -1.35
SS18-214ENST00000580003 MEIS3Q99687 375 aa6.62□□□□□ -1.35
SS18-214ENST00000580003 MSTO1Q9BUK6 570 aa6.62□□□□□ -1.35
SS18-214ENST00000580003 INTS2Q9H0H0 1204 aaKnown RBP6.62□□□□□ -1.35
SS18-214ENST00000580003 BABAM1Q9NWV8 329 aa6.62□□□□□ -1.35
SS18-214ENST00000580003 ANKRD10Q9NXR5 420 aa6.62□□□□□ -1.35
SS18-214ENST00000580003 PEMTQ9UBM1 199 aa6.62□□□□□ -1.35
SS18-214ENST00000580003 ZNF580Q9UK33 172 aa6.62□□□□□ -1.35
SS18-214ENST00000580003 IGHV4-28A0A0C4DH34 117 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 PABPN1LA6NDY0 278 aaKnown RBP6.61□□□□□ -1.35
SS18-214ENST00000580003 RRN3P2A6NIE6 340 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 SLC28A2O43868 658 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 ATP2C2O75185 946 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 CBSLP0DN79 551 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 TGFB3P10600 412 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 SLC2A4P14672 509 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 CCKBRP32239 447 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 TTKP33981 857 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 CBSP35520 551 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 VAMP2P63027 116 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 ST3GAL1Q11201 340 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 TDGQ13569 410 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 PLCB4Q15147 1175 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 TMEM95Q3KNT9 176 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 ZNF585BQ52M93 769 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 NAA35Q5VZE5 725 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 CES5AQ6NT32 575 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 ADHFE1Q8IWW8 467 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 MB21D2Q8IYB1 491 aaPredicted RBP6.61□□□□□ -1.35
SS18-214ENST00000580003 GPT2Q8TD30 523 aa6.61□□□□□ -1.35
SS18-214ENST00000580003 ADGRF5Q8IZF2 1346 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 A0A1B0GVM2 712 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 NCAM2O15394 837 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 PCNAP12004 261 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 PTPN2P17706 415 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 TNFRSF8P28908 595 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 CLCN5P51795 746 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 CDH15P55291 814 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 HDAC4P56524 1084 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 ADORA2A-AS1P86434 159 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 CTTNQ14247 550 aaKnown RBP6.6□□□□□ -1.35
SS18-214ENST00000580003 HLFQ16534 295 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 FAM160B2Q86V87 743 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 EXOC8Q8IYI6 725 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 NUDCD2Q8WVJ2 157 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 ELP4Q96EB1 424 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 TMEM51Q9NW97 253 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 BEX4Q9NWD9 120 aaPredicted RBP6.6□□□□□ -1.35
SS18-214ENST00000580003 NDRG3Q9UGV2 375 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 PAM16Q9Y3D7 125 aa6.6□□□□□ -1.35
SS18-214ENST00000580003 LRRFIP2Q9Y608 721 aaKnown RBP6.6□□□□□ -1.35
SS18-214ENST00000580003 TEX22C9J3V5 150 aa6.59□□□□□ -1.35
SS18-214ENST00000580003 KCNJ13O60928 360 aa6.59□□□□□ -1.35
SS18-214ENST00000580003 SERPINI2O75830 405 aa6.59□□□□□ -1.35
SS18-214ENST00000580003 C21orf33P30042 268 aaPredicted RBP6.59□□□□□ -1.35
SS18-214ENST00000580003 PRAMEF19Q5SWL8 479 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 569.5 ms