RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CCNJLQ8IV13 435 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 IGDCC3Q8IVU1 814 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 PLCD3Q8N3E9 789 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 SH2D3CQ8N5H7 860 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 HLA-CQ95604 372 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 STAMBPL1Q96FJ0 436 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 IFT43Q96FT9 208 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 FEM1CQ96JP0 617 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 EXOC2Q96KP1 924 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 RPL10LQ96L21 214 aaKnown RBP13.85□□□□□ -0.19
CCDC40-209ENST00000573474 ZIM3Q96PE6 472 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 RUFY1Q96T51 708 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 APOL2Q9BQE5 337 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 WDR83Q9BRX9 315 aaKnown RBP13.85□□□□□ -0.19
CCDC40-209ENST00000573474 NAT9Q9BTE0 207 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 VPS37BQ9H9H4 285 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 ARNT2Q9HBZ2 717 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 PIH1D1Q9NWS0 290 aaKnown RBP13.85□□□□□ -0.19
CCDC40-209ENST00000573474 ZC3H7BQ9UGR2 993 aaKnown RBP13.85□□□□□ -0.19
CCDC40-209ENST00000573474 CHMP2BQ9UQN3 213 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 ARIH1Q9Y4X5 557 aaPredicted RBP13.85□□□□□ -0.19
CCDC40-209ENST00000573474 NFS1Q9Y697 457 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 MAD1L1Q9Y6D9 718 aa13.85□□□□□ -0.19
CCDC40-209ENST00000573474 KIF26AQ9ULI4 1882 aaPredicted RBP13.84□□□□□ -0.19
CCDC40-209ENST00000573474 MYOFQ9NZM1 2061 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 A0A087WUV0 522 aaPredicted RBP13.84□□□□□ -0.19
CCDC40-209ENST00000573474 LOC285095A0A1B0GVY8 99 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.84□□□□□ -0.19
CCDC40-209ENST00000573474 C2CD4DB7Z1M9 353 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 ARNTLO00327 626 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 SPAG6O75602 509 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 GJB3O75712 270 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 IGSF6O95976 241 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 GSRP00390 522 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 SRPRAP08240 638 aaKnown RBP13.84□□□□□ -0.19
CCDC40-209ENST00000573474 SP100P23497 879 aaPredicted RBP13.84□□□□□ -0.19
CCDC40-209ENST00000573474 GJA4P35212 333 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 NNMTP40261 264 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 EIF2DP41214 584 aaKnown RBP13.84□□□□□ -0.19
CCDC40-209ENST00000573474 MAPK8P45983 427 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 STK19P49842 368 aaPredicted RBP13.84□□□□□ -0.19
CCDC40-209ENST00000573474 GPX6P59796 221 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 IFFO1Q0D2I5 559 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 DLG2Q15700 870 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 PREPLQ4J6C6 727 aaPredicted RBP13.84□□□□□ -0.19
CCDC40-209ENST00000573474 DGKKQ5KSL6 1271 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 CERCAMQ5T4B2 595 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 UBAP2Q5T6F2 1119 aaKnown RBP13.84□□□□□ -0.19
CCDC40-209ENST00000573474 ARMC3Q5W041 872 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 CASC4Q6P4E1 433 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 C3orf62Q6ZUJ4 267 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 KDELC2Q7Z4H8 507 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 RNF135Q8IUD6 432 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 MPP5Q8N3R9 675 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 DEFB123Q8N688 67 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 PCDH20Q8N6Y1 951 aaKnown RBP13.84□□□□□ -0.19
CCDC40-209ENST00000573474 TTC8Q8TAM2 541 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 UHMK1Q8TAS1 419 aaKnown RBP13.84□□□□□ -0.19
CCDC40-209ENST00000573474 PPM1EQ8WY54 764 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 NXPE3Q969Y0 559 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 GUCD1Q96NT3 240 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 CCDC77Q9BR77 488 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 PHF7Q9BWX1 381 aaPredicted RBP13.84□□□□□ -0.19
CCDC40-209ENST00000573474 IL22Q9GZX6 179 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 BRD9Q9H8M2 597 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 ELOVL2Q9NXB9 296 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 GTSE1Q9NYZ3 720 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 SAMD15Q9P1V8 674 aa13.84□□□□□ -0.19
CCDC40-209ENST00000573474 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.83□□□□□ -0.2
CCDC40-209ENST00000573474 ATP9BO43861 1147 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 ZNF821O75541 412 aaPredicted RBP13.83□□□□□ -0.2
CCDC40-209ENST00000573474 NDST3O95803 873 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 DLDP09622 509 aaKnown RBP13.83□□□□□ -0.2
CCDC40-209ENST00000573474 TPH1P17752 444 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 PGAM1P18669 254 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 HLA-DPA1P20036 260 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 CA4P22748 312 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 OPRD1P41143 372 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 SNRPD1P62314 119 aaKnown RBP13.83□□□□□ -0.2
CCDC40-209ENST00000573474 FAM193AP78312 1265 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 GPS2Q13227 327 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 STAT4Q14765 748 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 EIF4HQ15056 248 aaKnown RBP13.83□□□□□ -0.2
CCDC40-209ENST00000573474 SLC1A5Q15758 541 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 ACCSLQ4AC99 568 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 CARD16Q5EG05 197 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 ATXN7L2Q5T6C5 722 aaPredicted RBP13.83□□□□□ -0.2
CCDC40-209ENST00000573474 C22orf39Q6P5X5 142 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 PLPP6Q8IY26 295 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 SLC25A41Q8N5S1 370 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 OR2AP1Q8NGE2 309 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 CSGALNACT1Q8TDX6 532 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 CFAP36Q96G28 342 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 MRGPRX3Q96LB0 322 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 NSMCE3Q96MG7 304 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 TRIB3Q96RU7 358 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 TMEM109Q9BVC6 243 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 TM6SF2Q9BZW4 377 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 CIPCQ9C0C6 399 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 SYBUQ9NX95 663 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms