RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 CROTQ9UKG9 612 aa10.88□□□□□ -0.67
CCDC40-207ENST00000572253 MYOCOSA0A1B0GUC4 107 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 MRASO14807 208 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 SNRPB2P08579 225 aaKnown RBP10.87□□□□□ -0.67
CCDC40-207ENST00000572253 GEMP55040 296 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 TXNL4AP83876 142 aaKnown RBP10.87□□□□□ -0.67
CCDC40-207ENST00000572253 PPIL2Q13356 520 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 CTBP1Q13363 440 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 IKBKEQ14164 716 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 AGAP9Q5VTM2 703 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 LPCAT2Q7L5N7 544 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 BNIPLQ7Z465 357 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 CHERPQ8IWX8 916 aaKnown RBP10.87□□□□□ -0.67
CCDC40-207ENST00000572253 LRTOMTQ8WZ04 291 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 MCMBPQ9BTE3 642 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 ARHGEF38Q9NXL2 777 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 FAF1Q9UNN5 650 aaPredicted RBP10.87□□□□□ -0.67
CCDC40-207ENST00000572253 PIN4Q9Y237 131 aaKnown RBP10.87□□□□□ -0.67
CCDC40-207ENST00000572253 GMEB1Q9Y692 573 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 hCG_2014768A0A024R1R8 64 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 TMEM233B4DJY2 109 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 E7ENX8 843 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 CSPG5O95196 566 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 CAPNS1P04632 268 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 JUNP05412 331 aaKnown RBP10.87□□□□□ -0.67
CCDC40-207ENST00000572253 CCDC166P0CW27 439 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 AXLP30530 894 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 SLC7A1P30825 629 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 ADARP55265 1226 aaKnown RBP10.87□□□□□ -0.67
CCDC40-207ENST00000572253 MPP1Q00013 466 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 POU4F1Q01851 419 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 REP15Q6BDI9 236 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 ZBTB49Q6ZSB9 765 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 CLEC20AQ6ZU45 233 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 HERC6Q8IVU3 1022 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 TMEM151AQ8N4L1 468 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 NPWQ8N729 165 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 PTCD2Q8WV60 388 aaKnown RBP10.87□□□□□ -0.67
CCDC40-207ENST00000572253 MAELQ96JY0 434 aaKnown RBP10.87□□□□□ -0.67
CCDC40-207ENST00000572253 ZNF597Q96LX8 424 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 FICDQ9BVA6 458 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 SLC2A11Q9BYW1 496 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 CDHR5Q9HBB8 845 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 OR12D3Q9UGF7 316 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 PCDHGA7Q9Y5G6 932 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 H3BSA7 217 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 PGK1P00558 417 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 ZNF26P17031 533 aaPredicted RBP10.87□□□□□ -0.67
CCDC40-207ENST00000572253 DAOAP59103 153 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 SEMA3BQ13214 749 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 SEPT6Q14141 434 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 RWDD4Q6NW29 188 aaKnown RBP10.87□□□□□ -0.67
CCDC40-207ENST00000572253 POTEHQ6S545 545 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 OSTM1Q86WC4 334 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 ATPAF2Q8N5M1 289 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 PCYOX1LQ8NBM8 494 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 TSPAN17Q96FV3 270 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 CELF6Q96J87 481 aaKnown RBP10.87□□□□□ -0.67
CCDC40-207ENST00000572253 OSMRQ99650 979 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 C16orf70Q9BSU1 422 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 CNGB3Q9NQW8 809 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 CHST12Q9NRB3 414 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 CCDC167Q9P0B6 97 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 PCDHGB4Q9UN71 923 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 PCDHGB5Q9Y5G0 923 aa10.87□□□□□ -0.67
CCDC40-207ENST00000572253 TARM1B6A8C7 271 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 C9IYK1 514 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 RBP1P09455 135 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 HNRNPLP14866 589 aaKnown RBP eCLIP10.86□□□□□ -0.67
CCDC40-207ENST00000572253 CDH2P19022 906 aaPredicted RBP10.86□□□□□ -0.67
CCDC40-207ENST00000572253 CSHL1Q14406 222 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 ZNF460Q14592 562 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 ALKAL1Q6UXT8 129 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 OTOP3Q7RTS5 596 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 DHFR2Q86XF0 187 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 ERI1Q8IV48 349 aaKnown RBP10.86□□□□□ -0.67
CCDC40-207ENST00000572253 COLEC11Q9BWP8 271 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 FSD1LQ9BXM9 530 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 UNKQ9C0B0 810 aaKnown RBP10.86□□□□□ -0.67
CCDC40-207ENST00000572253 CACNA2D2Q9NY47 1150 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 LTBP3Q9NS15 1303 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 DFFAO00273 331 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 PSMD8P48556 350 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 TAS2R39P59534 338 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 ZNF33AQ06730 810 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 TMED1Q13445 227 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 TBC1D25Q3MII6 688 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 ZNF470Q6ECI4 717 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 PTAR1Q7Z6K3 402 aaPredicted RBP10.86□□□□□ -0.67
CCDC40-207ENST00000572253 SLC22A9Q8IVM8 553 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 DENND6AQ8IWF6 608 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 CNTN4Q8IWV2 1026 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 SPATA6LQ8N4H0 392 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 TXNDC5Q8NBS9 432 aaKnown RBP10.86□□□□□ -0.67
CCDC40-207ENST00000572253 SHCBP1Q8NEM2 672 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 HM13Q8TCT9 377 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 CALML6Q8TD86 181 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 HEXDCQ8WVB3 486 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 TKTL2Q9H0I9 626 aa10.86□□□□□ -0.67
CCDC40-207ENST00000572253 PCDHAC1Q9H158 963 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms