RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 IRX1P78414 480 aaPredicted RBP23.03■■□□□ 1.28
VPS53-211ENST00000571805 BTBD8Q5XKL5 378 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 NAIF1Q69YI7 327 aaPredicted RBP23.03■■□□□ 1.28
VPS53-211ENST00000571805 KIAA0930Q6ICG6 404 aaPredicted RBP23.03■■□□□ 1.28
VPS53-211ENST00000571805 SCD5Q86SK9 330 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 RCN3Q96D15 328 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 ELMO2Q96JJ3 720 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 CDRT15Q96T59 188 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 CAMSAP3Q9P1Y5 1249 aaPredicted RBP23.03■■□□□ 1.28
VPS53-211ENST00000571805 CENPFP49454 3210 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 SCN10AQ9Y5Y9 1956 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 TNFRSF10BO14763 440 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 AHCYL1O43865 530 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 MGEA5O60502 916 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 ZNF623O75123 536 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 CD151P48509 253 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 HERC3Q15034 1050 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 ZNF423Q2M1K9 1284 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 PIGGQ5H8A4 983 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 ZNF470Q6ECI4 717 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 KDELC2Q7Z4H8 507 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 CCNYL1Q8N7R7 359 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 TXNDC5Q8NBS9 432 aaKnown RBP23.03■■□□□ 1.28
VPS53-211ENST00000571805 HEXDCQ8WVB3 486 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 PPP1R2P1Q96PQ5 205 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 SERPINI1Q99574 410 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 MRPL57Q9BQC6 102 aaKnown RBP23.03■■□□□ 1.28
VPS53-211ENST00000571805 ATXN3LQ9H3M9 355 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 ZBTB26Q9HCK0 441 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 FBXO5Q9UKT4 447 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 PIM1P11309 404 aaPredicted RBP23.02■■□□□ 1.28
VPS53-211ENST00000571805 THOP1P52888 689 aa23.02■■□□□ 1.28
VPS53-211ENST00000571805 SLC5A3P53794 718 aa23.02■■□□□ 1.28
VPS53-211ENST00000571805 PDCD2Q16342 344 aaPredicted RBP23.02■■□□□ 1.28
VPS53-211ENST00000571805 C14orf80Q86SX3 495 aa23.02■■□□□ 1.28
VPS53-211ENST00000571805 C2orf69Q8N8R5 385 aa23.02■■□□□ 1.28
VPS53-211ENST00000571805 MAELQ96JY0 434 aaKnown RBP23.02■■□□□ 1.28
VPS53-211ENST00000571805 MTG1Q9BT17 334 aaPredicted RBP23.02■■□□□ 1.28
VPS53-211ENST00000571805 TDRD15B5MCY1 1934 aaKnown RBP23.02■■□□□ 1.28
VPS53-211ENST00000571805 A0A087X1B8 175 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 TMEM233B4DJY2 109 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 AURKAO14965 403 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 GPR182O15218 404 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 PAPOLAP51003 745 aaKnown RBP23.01■■□□□ 1.27
VPS53-211ENST00000571805 OGFRL1Q5TC84 451 aaPredicted RBP23.01■■□□□ 1.27
VPS53-211ENST00000571805 NXNQ6DKJ4 435 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 OVOS1Q6IE37 1185 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 TIGD7Q6NT04 549 aaPredicted RBP23.01■■□□□ 1.27
VPS53-211ENST00000571805 CXCL17Q6UXB2 119 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 BNC2Q6ZN30 1099 aaPredicted RBP23.01■■□□□ 1.27
VPS53-211ENST00000571805 SERINC5Q86VE9 423 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 RTL3Q8N8U3 475 aaKnown RBP23.01■■□□□ 1.27
VPS53-211ENST00000571805 RSPH1Q8WYR4 309 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 FSD1LQ9BXM9 530 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 DSEQ9UL01 958 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 PSMD13Q9UNM6 376 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 KCNU1A8MYU2 1149 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 VCLP18206 1134 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 RGS2P41220 211 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 DNAJB13P59910 316 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 POU4F1Q01851 419 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 MED21Q13503 144 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 GNASQ5JWF2 1037 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 ZNF280DQ6N043 979 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 MARK4Q96L34 752 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 IGSF5Q9NSI5 407 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 MPP6Q9NZW5 540 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 HS3ST4Q9Y661 456 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 COPG1Q9Y678 874 aaKnown RBP23.01■■□□□ 1.27
VPS53-211ENST00000571805 TTC3P53804 2025 aa23.01■■□□□ 1.27
VPS53-211ENST00000571805 E9PAM4 449 aa23■■□□□ 1.27
VPS53-211ENST00000571805 DUSP11O75319 330 aaKnown RBP23■■□□□ 1.27
VPS53-211ENST00000571805 ITGB1P05556 798 aa23■■□□□ 1.27
VPS53-211ENST00000571805 AKR1A1P14550 325 aa23■■□□□ 1.27
VPS53-211ENST00000571805 PAMP19021 973 aa23■■□□□ 1.27
VPS53-211ENST00000571805 DPP6P42658 865 aa23■■□□□ 1.27
VPS53-211ENST00000571805 NEPROQ6NW34 567 aa23■■□□□ 1.27
VPS53-211ENST00000571805 CNSTQ6PJW8 725 aa23■■□□□ 1.27
VPS53-211ENST00000571805 KDELC1Q6UW63 502 aa23■■□□□ 1.27
VPS53-211ENST00000571805 TRPV1Q8NER1 839 aa23■■□□□ 1.27
VPS53-211ENST00000571805 SGF29Q96ES7 293 aa23■■□□□ 1.27
VPS53-211ENST00000571805 FAM192AQ9GZU8 254 aa23■■□□□ 1.27
VPS53-211ENST00000571805 NMUR1Q9HB89 426 aa23■■□□□ 1.27
VPS53-211ENST00000571805 SPATS2LQ9NUQ6 558 aaKnown RBP23■■□□□ 1.27
VPS53-211ENST00000571805 CLIC5Q9NZA1 410 aa23■■□□□ 1.27
VPS53-211ENST00000571805 NCKIPSDQ9NZQ3 722 aa23■■□□□ 1.27
VPS53-211ENST00000571805 NUDT5Q9UKK9 219 aa23■■□□□ 1.27
VPS53-211ENST00000571805 PADI3Q9ULW8 664 aa23■■□□□ 1.27
VPS53-211ENST00000571805 SDHDO14521 159 aa23■■□□□ 1.27
VPS53-211ENST00000571805 KPNA6O60684 536 aa23■■□□□ 1.27
VPS53-211ENST00000571805 TADA2AO75478 443 aa23■■□□□ 1.27
VPS53-211ENST00000571805 XRCC1P18887 633 aaPredicted RBP23■■□□□ 1.27
VPS53-211ENST00000571805 CEACAM7Q14002 265 aa23■■□□□ 1.27
VPS53-211ENST00000571805 MAPRE1Q15691 268 aaKnown RBP23■■□□□ 1.27
VPS53-211ENST00000571805 NOMO2Q5JPE7 1267 aa23■■□□□ 1.27
VPS53-211ENST00000571805 RBM20Q5T481 1227 aaKnown RBP23■■□□□ 1.27
VPS53-211ENST00000571805 PIWIL4Q7Z3Z4 852 aaKnown RBP23■■□□□ 1.27
VPS53-211ENST00000571805 PGAM4Q8N0Y7 254 aa23■■□□□ 1.27
VPS53-211ENST00000571805 PQLC1Q8N2U9 271 aa23■■□□□ 1.27
VPS53-211ENST00000571805 PRKD2Q9BZL6 878 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms