RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PLXND1Q9Y4D7 1925 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 HACD1B0YJ81 288 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 C1QTNF3-AMACRE9PGA6 284 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 J3KR12 359 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 MATN3O15232 486 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 SIN3BO75182 1162 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 IGSF6O95976 241 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 ADH1BP00325 375 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 PRNPP04156 253 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 KRT10P13645 584 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 CSNK1DP48730 415 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 CCDC15Q0P6D6 951 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 TTC31Q49AM3 519 aaPredicted RBP20.9■□□□□ 0.94
VPS53-210ENST00000571456 CARD16Q5EG05 197 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 ZNF569Q5MCW4 686 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 KAZNQ674X7 775 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 TMPRSS6Q8IU80 811 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 OR2AP1Q8NGE2 309 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 MAIP1Q8WWC4 291 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 HHIPQ96QV1 700 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 TLR10Q9BXR5 811 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 FRMD8P1Q9BZ68 369 aaPredicted RBP20.9■□□□□ 0.94
VPS53-210ENST00000571456 MFHAS1Q9Y4C4 1052 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 ASXL3Q9C0F0 2248 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 PI4KAP42356 2102 aa20.9■□□□□ 0.94
VPS53-210ENST00000571456 GON4LQ3T8J9 2241 aa20.89■□□□□ 0.94
VPS53-210ENST00000571456 SMAD6O43541 496 aaKnown RBP20.89■□□□□ 0.93
VPS53-210ENST00000571456 GABRG2P18507 467 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 CES1P23141 567 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 COPAP53621 1224 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 RHOAP61586 193 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 DYNLT1P63172 113 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 LBRQ14739 615 aaKnown RBP20.89■□□□□ 0.93
VPS53-210ENST00000571456 MARC1Q5VT66 337 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 ANO7Q6IWH7 933 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 Q6ZVU0 165 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 PDZD3Q86UT5 571 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 CCDC13Q8IYE1 715 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 DEFB124Q8NES8 71 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 TMIEQ8NEW7 156 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 MDGA1Q8NFP4 955 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 OR2A12Q8NGT7 310 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 MAML1Q92585 1016 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 HAUS1Q96CS2 278 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 SIPA1Q96FS4 1042 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 MRGPRX1Q96LB2 322 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 CINPQ9BW66 212 aaPredicted RBP20.89■□□□□ 0.93
VPS53-210ENST00000571456 OSBPL1AQ9BXW6 950 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 KLK13Q9UKR3 277 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 FCF1Q9Y324 198 aaKnown RBP20.89■□□□□ 0.93
VPS53-210ENST00000571456 GPSM3Q9Y4H4 160 aa20.89■□□□□ 0.93
VPS53-210ENST00000571456 K7ERQ8 282 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 CDX4O14627 284 aaPredicted RBP20.88■□□□□ 0.93
VPS53-210ENST00000571456 KCNK3O14649 394 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 KHNYNO15037 678 aaKnown RBP20.88■□□□□ 0.93
VPS53-210ENST00000571456 ZNF821O75541 412 aaPredicted RBP20.88■□□□□ 0.93
VPS53-210ENST00000571456 POP4O95707 220 aaKnown RBP20.88■□□□□ 0.93
VPS53-210ENST00000571456 DNTTP04053 509 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 ACADMP11310 421 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 NDUFV2P19404 249 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 C5AR1P21730 350 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 SLC10A2Q12908 348 aaPredicted RBP20.88■□□□□ 0.93
VPS53-210ENST00000571456 ZNF235Q14590 738 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 USP39Q53GS9 565 aaKnown RBP20.88■□□□□ 0.93
VPS53-210ENST00000571456 USP30Q70CQ3 517 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 PROSER1Q86XN7 944 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 PGBD3Q8N328 593 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 TEX26Q8N6G2 289 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 CCNYQ8ND76 341 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 HMGB4Q8WW32 186 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 PBKQ96KB5 322 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 SPACA7Q96KW9 195 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 HEPHQ9BQS7 1158 aa20.88■□□□□ 0.93
VPS53-210ENST00000571456 MKRN2Q9H000 416 aaKnown RBP20.88■□□□□ 0.93
VPS53-210ENST00000571456 CES2O00748 559 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 NEBLO76041 1014 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 PEX11BO96011 259 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 IGLV3-19P01714 112 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 OXTRP30559 389 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 CHRNA3P32297 505 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 MMP13P45452 471 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 NOMO1Q15155 1222 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 CYTH1Q15438 398 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 DCAF12L1Q5VU92 463 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 C19orf48Q6RUI8 117 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 STK40Q8N2I9 435 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 SLC35F6Q8N357 371 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 ZNF366Q8N895 744 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 TFB1MQ8WVM0 346 aaKnown RBP20.87■□□□□ 0.93
VPS53-210ENST00000571456 PPP1R16AQ96I34 528 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 VAT1Q99536 393 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 HEMGNQ9BXL5 484 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 CPEB1Q9BZB8 566 aaKnown RBP20.87■□□□□ 0.93
VPS53-210ENST00000571456 HECAQ9UBI9 543 aaPredicted RBP20.87■□□□□ 0.93
VPS53-210ENST00000571456 IL36AQ9UHA7 158 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 PPM1HQ9ULR3 514 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 ZKSCAN5Q9Y2L8 839 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 APC2O95996 2303 aa20.87■□□□□ 0.93
VPS53-210ENST00000571456 USP27XA6NNY8 438 aa20.86■□□□□ 0.93
VPS53-210ENST00000571456 NUMBP49757 651 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms