RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 A0A1W2PQU0 124 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 A0A1W2PR77 199 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 C16orf96A6NNT2 1141 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 UPK3BL1B0FP48 263 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 UPK3BL2E5RIL1 263 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 DFFAO00273 331 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 VILLO15195 856 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 UGT2B4P06133 528 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 CD48P09326 243 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 ADRB3P13945 408 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 CD38P28907 300 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 ARL4AP40617 200 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 CTSKP43235 329 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 SSR1P43307 286 aaKnown RBP15.25■□□□□ 0.03
VPS39-210ENST00000568357 ARSEP51690 589 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 ZNF75DP51815 510 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 NEK3P51956 506 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 RHOAP61586 193 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 SLC14A1Q13336 389 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 ZNF805Q5CZA5 627 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 PRAMEF14Q5SWL7 426 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 NEK5Q6P3R8 708 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 FBXL19Q6PCT2 694 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 IL27RAQ6UWB1 636 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 PARS2Q7L3T8 475 aaKnown RBP15.25■□□□□ 0.03
VPS39-210ENST00000568357 ADAT2Q7Z6V5 191 aaKnown RBP15.25■□□□□ 0.03
VPS39-210ENST00000568357 SLC35G2Q8TBE7 412 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 FAM71BQ8TC56 605 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 KLK6Q92876 244 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 EXOC2Q96KP1 924 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 GDAP1L1Q96MZ0 367 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 AASDHPPTQ9NRN7 309 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 TPX2Q9ULW0 747 aaKnown RBP15.25■□□□□ 0.03
VPS39-210ENST00000568357 ZFR2Q9UPR6 939 aaKnown RBP15.25■□□□□ 0.03
VPS39-210ENST00000568357 CA5BQ9Y2D0 317 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 FADS3Q9Y5Q0 445 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 NBEAQ8NFP9 2946 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 PI4KAP42356 2102 aa15.25■□□□□ 0.03
VPS39-210ENST00000568357 SMG1Q96Q15 3661 aaKnown RBP15.24■□□□□ 0.03
VPS39-210ENST00000568357 CHD5Q8TDI0 1954 aa15.24■□□□□ 0.03
VPS39-210ENST00000568357 SLC31A1O15431 190 aa15.24■□□□□ 0.03
VPS39-210ENST00000568357 SH3BP5O60239 455 aa15.24■□□□□ 0.03
VPS39-210ENST00000568357 PCDH8O95206 1070 aa15.24■□□□□ 0.03
VPS39-210ENST00000568357 CEACAM1P13688 526 aa15.24■□□□□ 0.03
VPS39-210ENST00000568357 CDH6P55285 790 aa15.24■□□□□ 0.03
VPS39-210ENST00000568357 MMRN1Q13201 1228 aa15.24■□□□□ 0.03
VPS39-210ENST00000568357 HADHQ16836 314 aaKnown RBP15.24■□□□□ 0.03
VPS39-210ENST00000568357 ZNF284Q2VY69 593 aa15.24■□□□□ 0.03
VPS39-210ENST00000568357 SEL1L3Q68CR1 1132 aa15.24■□□□□ 0.03
VPS39-210ENST00000568357 NAPEPLDQ6IQ20 393 aa15.24■□□□□ 0.03
VPS39-210ENST00000568357 GDPD4Q6W3E5 623 aa15.24■□□□□ 0.03
VPS39-210ENST00000568357 HORMAD1Q86X24 394 aa15.24■□□□□ 0.03
VPS39-210ENST00000568357 LZTR1Q8N653 840 aa15.24■□□□□ 0.03
VPS39-210ENST00000568357 KLHL32Q96NJ5 620 aa15.24■□□□□ 0.03
VPS39-210ENST00000568357 CAMK1GQ96NX5 476 aa15.24■□□□□ 0.03
VPS39-210ENST00000568357 IPO11Q9UI26 975 aaKnown RBP15.24■□□□□ 0.03
VPS39-210ENST00000568357 ADAMTS9Q9P2N4 1935 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 TMEM110-MUSTN1A8MSY1 372 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 H0Y8X5 98 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 TLR4O00206 839 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 BUB1BO60566 1050 aaPredicted RBP15.23■□□□□ 0.03
VPS39-210ENST00000568357 PALMO75781 387 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 CER1O95813 267 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 IGSF6O95976 241 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 ZNF883P0CG24 379 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 PRLRP16471 622 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 ITIH2P19823 946 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 GJC1P36383 396 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 ABL2P42684 1182 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 RGRP47804 291 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 C21orf59P57076 290 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 FAM193AP78312 1265 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 IL10RBQ08334 325 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 KRT81Q14533 505 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 MESDQ14696 234 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 TMEM259Q4ZIN3 620 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 SETMARQ53H47 684 aaPredicted RBP15.23■□□□□ 0.03
VPS39-210ENST00000568357 TMCO3Q6UWJ1 677 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 DBX2Q6ZNG2 339 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 TSEN2Q8NCE0 465 aaKnown RBP15.23■□□□□ 0.03
VPS39-210ENST00000568357 MRFAP1L1Q96HT8 127 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 OSBPL1AQ9BXW6 950 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 CPEB1Q9BZB8 566 aaKnown RBP15.23■□□□□ 0.03
VPS39-210ENST00000568357 TM7SF3Q9NS93 570 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 KLHL11Q9NVR0 708 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 GGT7Q9UJ14 662 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 DMTF1Q9Y222 760 aa15.23■□□□□ 0.03
VPS39-210ENST00000568357 NYNRINQ9P2P1 1898 aaKnown RBP15.23■□□□□ 0.03
VPS39-210ENST00000568357 PRAMEF26H0Y7S4 382 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 MUSKO15146 869 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 SPINT1O43278 529 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 AP1G1O43747 822 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 PEX11BO96011 259 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 TIMP2P16035 220 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 NUDT1P36639 197 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 RAD51Q06609 339 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 DPYSL3Q14195 570 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 FGL2Q14314 439 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 STAT4Q14765 748 aa15.22■□□□□ 0.03
VPS39-210ENST00000568357 ZNF423Q2M1K9 1284 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms