RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 NOL6Q9H6R4 1146 aaKnown RBP16.32■□□□□ 0.2
CLN3-229ENST00000567963 SEPT11Q9NVA2 429 aaKnown RBP16.32■□□□□ 0.2
CLN3-229ENST00000567963 NEMP1O14524 444 aa16.31■□□□□ 0.2
CLN3-229ENST00000567963 CCP110O43303 1012 aa16.31■□□□□ 0.2
CLN3-229ENST00000567963 BUB1O43683 1085 aa16.31■□□□□ 0.2
CLN3-229ENST00000567963 RPL7AP62424 266 aaKnown RBP16.31■□□□□ 0.2
CLN3-229ENST00000567963 INO80DQ53TQ3 878 aaPredicted RBP16.31■□□□□ 0.2
CLN3-229ENST00000567963 EFHC2Q5JST6 749 aa16.31■□□□□ 0.2
CLN3-229ENST00000567963 ATXN7L2Q5T6C5 722 aaPredicted RBP16.31■□□□□ 0.2
CLN3-229ENST00000567963 GDPD4Q6W3E5 623 aa16.31■□□□□ 0.2
CLN3-229ENST00000567963 APTXQ7Z2E3 356 aaKnown RBP16.31■□□□□ 0.2
CLN3-229ENST00000567963 PARGQ86W56 976 aa16.31■□□□□ 0.2
CLN3-229ENST00000567963 ZNF354CQ86Y25 554 aa16.31■□□□□ 0.2
CLN3-229ENST00000567963 RTL3Q8N8U3 475 aaKnown RBP16.31■□□□□ 0.2
CLN3-229ENST00000567963 FAM181AQ8N9Y4 354 aa16.31■□□□□ 0.2
CLN3-229ENST00000567963 CASKIN2Q8WXE0 1202 aa16.31■□□□□ 0.2
CLN3-229ENST00000567963 ARHGEF26Q96DR7 871 aa16.31■□□□□ 0.2
CLN3-229ENST00000567963 TTYH3Q9C0H2 523 aa16.31■□□□□ 0.2
CLN3-229ENST00000567963 HSD3B7Q9H2F3 369 aa16.31■□□□□ 0.2
CLN3-229ENST00000567963 FZD10Q9ULW2 581 aa16.31■□□□□ 0.2
CLN3-229ENST00000567963 ITM2BQ9Y287 266 aa16.31■□□□□ 0.2
CLN3-229ENST00000567963 LY6G6EA0A0G2JKS1 128 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 K7ESM1 405 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 AREL1O15033 823 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 SPINT1O43278 529 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 TLX3O43711 291 aaPredicted RBP16.3■□□□□ 0.2
CLN3-229ENST00000567963 CREB3O43889 395 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 NEBLO76041 1014 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 TMCC1O94876 653 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 MT-CO3P00414 261 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 NME1P15531 152 aaKnown RBP16.3■□□□□ 0.2
CLN3-229ENST00000567963 ANP32AP39687 249 aaKnown RBP16.3■□□□□ 0.2
CLN3-229ENST00000567963 EIF2S3P41091 472 aaKnown RBP16.3■□□□□ 0.2
CLN3-229ENST00000567963 AIF1P55008 147 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 YBEYP58557 167 aaPredicted RBP16.3■□□□□ 0.2
CLN3-229ENST00000567963 PDE1CQ14123 709 aaPredicted RBP16.3■□□□□ 0.2
CLN3-229ENST00000567963 NCAPHQ15003 741 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 STX1AQ16623 288 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 SOWAHCQ53LP3 525 aaPredicted RBP16.3■□□□□ 0.2
CLN3-229ENST00000567963 PPP1R15BQ5SWA1 713 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 DNAJC24Q6P3W2 148 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 TTC7BQ86TV6 843 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 DENND6BQ8NEG7 585 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 BAP1Q92560 729 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 CENPTQ96BT3 561 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 MCEEQ96PE7 176 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 GBP4Q96PP9 640 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 KLC2Q9H0B6 622 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 IPO11Q9UI26 975 aaKnown RBP16.3■□□□□ 0.2
CLN3-229ENST00000567963 KLF15Q9UIH9 416 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 MFHAS1Q9Y4C4 1052 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 U3KQA8 63 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 ATRXP46100 2492 aa16.3■□□□□ 0.2
CLN3-229ENST00000567963 IGSF10Q6WRI0 2623 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 ANKRD62A6NC57 917 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 WASH4PA8MWX3 477 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 H3BM21 787 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 GP1BAP07359 652 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 MYF5P13349 255 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 ABCG1P45844 678 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 PFN3P60673 137 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 RAD51Q06609 339 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 SERINC3Q13530 473 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 TPRG1LQ5T0D9 272 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 ACAD10Q6JQN1 1059 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 KDM7AQ6ZMT4 941 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 MCOLN2Q8IZK6 566 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 NETO2Q8NC67 525 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 ZNF548Q8NEK5 533 aaPredicted RBP16.29■□□□□ 0.2
CLN3-229ENST00000567963 HMCESQ96FZ2 354 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 CRELD1Q96HD1 420 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 GDAP1L1Q96MZ0 367 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 EPAS1Q99814 870 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 CNPY3Q9BT09 278 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 CATSPERBQ9H7T0 1116 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 USP29Q9HBJ7 922 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 CSNK1G3Q9Y6M4 447 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 BPTFQ12830 3046 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 RASA4BC9J798 803 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 RASA4O43374 803 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 OPA1O60313 960 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 IGSF6O95976 241 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 CCDC172P0C7W6 258 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 ITPKBP27987 946 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 DUSP3P51452 185 aaPredicted RBP16.29■□□□□ 0.2
CLN3-229ENST00000567963 PARP15Q460N3 678 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 LRRC73Q5JTD7 316 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 CDCP2Q5VXM1 449 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 IRF2BP2Q7Z5L9 587 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 UMODL1-AS1Q8N2C9 162 aa16.29■□□□□ 0.2
CLN3-229ENST00000567963 CPEB1Q9BZB8 566 aaKnown RBP16.29■□□□□ 0.2
CLN3-229ENST00000567963 AQP9O43315 295 aa16.28■□□□□ 0.2
CLN3-229ENST00000567963 BRINP1O60477 761 aa16.28■□□□□ 0.2
CLN3-229ENST00000567963 MMP20O60882 483 aa16.28■□□□□ 0.2
CLN3-229ENST00000567963 TM7SF2O76062 418 aa16.28■□□□□ 0.2
CLN3-229ENST00000567963 FERP16591 822 aa16.28■□□□□ 0.2
CLN3-229ENST00000567963 JUNDP17535 347 aa16.28■□□□□ 0.2
CLN3-229ENST00000567963 RHOAP61586 193 aa16.28■□□□□ 0.2
CLN3-229ENST00000567963 EIF2B5Q13144 721 aaKnown RBP16.28■□□□□ 0.2
CLN3-229ENST00000567963 PTK2BQ14289 1009 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms