RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	EEF2K	O00418	725 aa	Known RBP	7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	NEMP1	O14524	444 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	TSPAN6	O43657	245 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	AP1G1	O43747	822 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	TMCC1	O94876	653 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	LDOC1	O95751	146 aa	Predicted RBP	7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	IGSF6	O95976	241 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	PAK4	O96013	591 aa	Predicted RBP	7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	PROS1	P07225	676 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	C1QTNF9	P0C862	333 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	PRLR	P16471	622 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	HNRNPA2B1	P22626	353 aa	Known RBP	7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	MIP	P30301	263 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	AKT2	P31751	481 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	GK	P32189	559 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	PCK1	P35558	622 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	PAPOLA	P51003	745 aa	Known RBP	7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	ZNF135	P52742	658 aa	Predicted RBP	7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	RHOA	P61586	193 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	BNIP3	Q12983	259 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	CYTH1	Q15438	398 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	SHB	Q15464	509 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	ZSCAN23	Q3MJ62	389 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	TMEM259	Q4ZIN3	620 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	TDRD12	Q587J7	1177 aa	Known RBP	7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	HGSNAT	Q68CP4	663 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	SEL1L3	Q68CR1	1132 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	KIAA1161	Q6NSJ0	714 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	UNQ6494/PRO21346	Q6UXR6	183 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	GDPD4	Q6W3E5	623 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	PARS2	Q7L3T8	475 aa	Known RBP	7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	TTC7B	Q86TV6	843 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	ZSCAN30	Q86W11	494 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	GATAD2A	Q86YP4	633 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	DCP2	Q8IU60	420 aa	Known RBP	7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	TMEM145	Q8NBT3	493 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	OR6K2	Q8NGY2	324 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	FAM174A	Q8TBP5	190 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	SAP25	Q8TEE9	199 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	GDAP1L1	Q96MZ0	367 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	KLHL32	Q96NJ5	620 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	PEBP4	Q96S96	227 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	SNRNP25	Q9BV90	132 aa	Known RBP	7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	C1QTNF2	Q9BXJ5	285 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	OSBPL1A	Q9BXW6	950 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	CPEB1	Q9BZB8	566 aa	Known RBP	7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	TRIM7	Q9C029	511 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	LRRC19	Q9H756	370 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	IFNK	Q9P0W0	207 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	FTSJ1	Q9UET6	329 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	CA5B	Q9Y2D0	317 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	MFHAS1	Q9Y4C4	1052 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	7.02	□□□□□ -1.29	1e-11	■■□□□ 13.7
SF3B3-209	ENST00000567635	FADS3	Q9Y5Q0	445 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	HS3ST3A1	Q9Y663	406 aa		7.02	□□□□□ -1.29
SF3B3-209	ENST00000567635	KIF26B	Q2KJY2	2108 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635		A0A087X0T9	212 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	TMEM8B	A6NDV4	472 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	IGLON5	A6NGN9	336 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635		J3KR12	359 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	PRAMEF11	O60813	436 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	LRCH4	O75427	683 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	DKK1	O94907	266 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	UGT2B4	P06133	528 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	TPM3	P06753	285 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	C1S	P09871	688 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	FAM228B	P0C875	321 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	THEGL	P0DJG4	465 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	TIMP2	P16035	220 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	ERCC2	P18074	760 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	CLDN2	P57739	230 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	PIGH	Q14442	188 aa	Predicted RBP	7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	GRM3	Q14832	879 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	CA9	Q16790	459 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	BOLA3	Q53S33	107 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	PPP6R3	Q5H9R7	873 aa	Predicted RBP	7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	AFMID	Q63HM1	303 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	ALKBH5	Q6P6C2	394 aa	Known RBP	7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	CCNI2	Q6ZMN8	369 aa	Predicted RBP	7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635		Q6ZSR6	202 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	RFX8	Q6ZV50	586 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	EID2	Q8N6I1	236 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	KDF1	Q8NAX2	398 aa	Predicted RBP	7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	NETO2	Q8NC67	525 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	HCAR2	Q8TDS4	363 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	ASB12	Q8WXK4	309 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	GATA6	Q92908	595 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	ARHGEF26	Q96DR7	871 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	CELF6	Q96J87	481 aa	Known RBP	7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	LENG8	Q96PV6	779 aa	Predicted RBP	7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	KCTD15	Q96SI1	283 aa	Predicted RBP	7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	MYOC	Q99972	504 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	SLC39A8	Q9C0K1	460 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	THAP2	Q9H0W7	228 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	OCEL1	Q9H607	264 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	KLHL11	Q9NVR0	708 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	TOR4A	Q9NXH8	423 aa		7.01	□□□□□ -1.29
SF3B3-209	ENST00000567635	CWC15	Q9P013	229 aa	Known RBP	7.01	□□□□□ -1.29

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms