RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PRKD1Q15139 912 aaPredicted RBP19.79■□□□□ 0.76
CLN3-225ENST00000566824 RPS6KA1Q15418 735 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 CCDC6Q16204 474 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 LRRC73Q5JTD7 316 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 GDPD4Q6W3E5 623 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 SLC36A4Q6YBV0 504 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 LPCAT2Q7L5N7 544 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 ZC3H18Q86VM9 953 aaKnown RBP19.79■□□□□ 0.76
CLN3-225ENST00000566824 ZSWIM9Q86XI8 627 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 DCLK2Q8N568 766 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 CNTD1Q8N815 330 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 TRIM58Q8NG06 486 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 FATE1Q969F0 183 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 ALS2CR12Q96Q35 445 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 MGME1Q9BQP7 344 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 BTBD1Q9H0C5 482 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 SEMA4AQ9H3S1 761 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 NOD2Q9HC29 1040 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 RBM22Q9NW64 420 aaKnown RBP eCLIP19.79■□□□□ 0.76
CLN3-225ENST00000566824 FZD4Q9ULV1 537 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 EFR3BQ9Y2G0 817 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 R3HDM2Q9Y2K5 976 aaKnown RBP19.79■□□□□ 0.76
CLN3-225ENST00000566824 SLCO1B1Q9Y6L6 691 aa19.79■□□□□ 0.76
CLN3-225ENST00000566824 FAM47DPA6NHR8 397 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 C16orf96A6NNT2 1141 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 C10orf142B7Z368 130 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 APOC4-APOC2K7ER74 178 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 SPINT1O43278 529 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 APOC2P02655 101 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 ITGB7P26010 798 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 MAOBP27338 520 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 ABL2P42684 1182 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 NR2C2P49116 596 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 OTUD4Q01804 1114 aaKnown RBP19.78■□□□□ 0.76
CLN3-225ENST00000566824 NSUN2Q08J23 767 aaKnown RBP eCLIP19.78■□□□□ 0.76
CLN3-225ENST00000566824 ELF2Q15723 593 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 ZNF805Q5CZA5 627 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 TIGD7Q6NT04 549 aaPredicted RBP19.78■□□□□ 0.76
CLN3-225ENST00000566824 NCEH1Q6PIU2 408 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 ERN2Q76MJ5 926 aaKnown RBP19.78■□□□□ 0.76
CLN3-225ENST00000566824 C17orf53Q8N3J3 647 aaPredicted RBP19.78■□□□□ 0.76
CLN3-225ENST00000566824 OR14C36Q8NHC7 312 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 ACTL9Q8TC94 416 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 P3H4Q92791 437 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 HSPA12BQ96MM6 686 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 IL12RB2Q99665 862 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 CPEB1Q9BZB8 566 aaKnown RBP19.78■□□□□ 0.76
CLN3-225ENST00000566824 SGK2Q9HBY8 427 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 SEPT10Q9P0V9 454 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 LRRK1Q38SD2 2015 aa19.78■□□□□ 0.76
CLN3-225ENST00000566824 ATXN2Q99700 1313 aaKnown RBP19.78■□□□□ 0.76
CLN3-225ENST00000566824 FAM186AA6NE01 2351 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 ENC1O14682 589 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 RHOBTB1O94844 696 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 ITPKAP23677 461 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 PI4KAP42356 2102 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 RENBPP51606 427 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 PPP2CBP62714 309 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 PPP2CAP67775 309 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 IFI35P80217 286 aaPredicted RBP19.77■□□□□ 0.76
CLN3-225ENST00000566824 DSC2Q02487 901 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 ZNF33AQ06730 810 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 NIPAL4Q0D2K0 466 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 KLF1Q13351 362 aaPredicted RBP19.77■□□□□ 0.76
CLN3-225ENST00000566824 NOMO1Q15155 1222 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 ZNF569Q5MCW4 686 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 LAIR1Q6GTX8 287 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 SLC35F6Q8N357 371 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 NSMCE1Q8WV22 266 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 NUDCD1Q96RS6 583 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 HDAC8Q9BY41 377 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 ARRDC1-AS1Q9H2J1 176 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 SMOC1Q9H4F8 434 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 TMEM74BQ9NUR3 256 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 GGT7Q9UJ14 662 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 RAB23Q9ULC3 237 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 ITM2BQ9Y287 266 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 ATP8A1Q9Y2Q0 1164 aa19.77■□□□□ 0.76
CLN3-225ENST00000566824 GVINP1Q7Z2Y8 2422 aa19.77■□□□□ 0.75
CLN3-225ENST00000566824 METTL12A8MUP2 240 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 KCNK3O14649 394 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 PPP1R12AO14974 1030 aaPredicted RBP19.76■□□□□ 0.75
CLN3-225ENST00000566824 PLRG1O43660 514 aaKnown RBP19.76■□□□□ 0.75
CLN3-225ENST00000566824 EPN2O95208 641 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 PRKCGP05129 697 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 IGHV4-34P06331 123 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 ADRB3P13945 408 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 TIMP2P16035 220 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 WASHC5Q12768 1159 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 C11orf74Q86VG3 221 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 ARRDC2Q8TBH0 407 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 LRIG1Q96JA1 1093 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 QKIQ96PU8 341 aaKnown RBP eCLIP19.76■□□□□ 0.75
CLN3-225ENST00000566824 SEMA3CQ99985 751 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 SUV39H2Q9H5I1 410 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 EBF2Q9HAK2 575 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 SCUBE2Q9NQ36 999 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 PCDHGC4Q9Y5F7 938 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 TRPM6Q9BX84 2022 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 TRAFD1O14545 582 aaPredicted RBP19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms