RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 LRRC73Q5JTD7 316 aa10.54□□□□□ -0.72
SF3B3-204ENST00000563739 MACC1Q6ZN28 852 aa10.54□□□□□ -0.72
SF3B3-204ENST00000563739 FAM183BPQ6ZVS7 135 aa10.54□□□□□ -0.72
SF3B3-204ENST00000563739 BNIPLQ7Z465 357 aa10.54□□□□□ -0.72
SF3B3-204ENST00000563739 PTRH1Q86Y79 214 aaKnown RBP10.54□□□□□ -0.72
SF3B3-204ENST00000563739 ARL10Q8N8L6 244 aa10.54□□□□□ -0.72
SF3B3-204ENST00000563739 OR6K2Q8NGY2 324 aa10.54□□□□□ -0.72
SF3B3-204ENST00000563739 ZNF564Q8TBZ8 553 aaPredicted RBP10.54□□□□□ -0.72
SF3B3-204ENST00000563739 IL12RB2Q99665 862 aa10.54□□□□□ -0.72
SF3B3-204ENST00000563739 SLC25A18Q9H1K4 315 aa10.54□□□□□ -0.72
SF3B3-204ENST00000563739 NCKIPSDQ9NZQ3 722 aa10.54□□□□□ -0.72
SF3B3-204ENST00000563739 MPP6Q9NZW5 540 aa10.54□□□□□ -0.72
SF3B3-204ENST00000563739 SPASTQ9UBP0 616 aa10.54□□□□□ -0.72
SF3B3-204ENST00000563739 AJAP1Q9UKB5 411 aaPredicted RBP10.54□□□□□ -0.72
SF3B3-204ENST00000563739 FCF1Q9Y324 198 aaKnown RBP10.54□□□□□ -0.72
SF3B3-204ENST00000563739 LOXL2Q9Y4K0 774 aa10.54□□□□□ -0.72
SF3B3-204ENST00000563739 CREBBPQ92793 2442 aa10.54□□□□□ -0.72
SF3B3-204ENST00000563739 CENPEQ02224 2701 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.53□□□□□ -0.72
SF3B3-204ENST00000563739 AGRPO00253 132 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 RIOK3O14730 519 aaKnown RBP10.53□□□□□ -0.72
SF3B3-204ENST00000563739 FPGTO14772 594 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 PPFIA2O75334 1257 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 DAB1O75553 588 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 ERBB2P04626 1255 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 CD44P16070 742 aaKnown RBP10.53□□□□□ -0.72
SF3B3-204ENST00000563739 SYKP43405 635 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 ACADSBP45954 432 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 CXCR3P49682 368 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 INHBCP55103 352 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 APBA1Q02410 837 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 EIF3IQ13347 325 aaKnown RBP10.53□□□□□ -0.72
SF3B3-204ENST00000563739 PNOCQ13519 176 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 PTPN20Q4JDL3 420 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 RAB6CQ53S08 254 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 ATL3Q6DD88 541 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 TFAP2DQ7Z6R9 452 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 JAMLQ86YT9 394 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 GPR156Q8NFN8 814 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 WDR48Q8TAF3 677 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 SPATA20Q8TB22 786 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 ZNF606Q8WXB4 792 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 SPOCK2Q92563 424 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 NT5C3BQ969T7 300 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 NPY6RQ99463 290 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 C2orf49Q9BVC5 232 aaPredicted RBP10.53□□□□□ -0.72
SF3B3-204ENST00000563739 CPEB1Q9BZB8 566 aaKnown RBP10.53□□□□□ -0.72
SF3B3-204ENST00000563739 RAB6CQ9H0N0 254 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 MUC3BQ9H195 1237 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 SYNDIG1Q9H7V2 258 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 NDFIP2Q9NV92 336 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 EVA1BQ9NVM1 165 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 ASNSD1Q9NWL6 643 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.53□□□□□ -0.72
SF3B3-204ENST00000563739 SIRPGQ9P1W8 387 aa10.53□□□□□ -0.72
SF3B3-204ENST00000563739 ARMCX3Q9UH62 379 aaPredicted RBP10.53□□□□□ -0.72
SF3B3-204ENST00000563739 CELSR2Q9HCU4 2923 aa10.52□□□□□ -0.72
SF3B3-204ENST00000563739 C16orf96A6NNT2 1141 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 RNF224P0DH78 156 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 ACVRL1P37023 503 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 CDK17Q00537 523 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 FKBP3Q00688 224 aaKnown RBP10.52□□□□□ -0.73
SF3B3-204ENST00000563739 MORC3Q14149 939 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 IRF4Q15306 451 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 GJB7Q6PEY0 223 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 SETD3Q86TU7 594 aaPredicted RBP10.52□□□□□ -0.73
SF3B3-204ENST00000563739 VPS36Q86VN1 386 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 PCDH20Q8N6Y1 951 aaKnown RBP10.52□□□□□ -0.73
SF3B3-204ENST00000563739 USP7Q93009 1102 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 PDXPQ96GD0 296 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 FEM1CQ96JP0 617 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 GFM1Q96RP9 751 aaKnown RBP10.52□□□□□ -0.73
SF3B3-204ENST00000563739 HEPHQ9BQS7 1158 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 TM6SF2Q9BZW4 377 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 CEP44Q9C0F1 390 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 SCAND2PQ9GZW5 306 aaPredicted RBP10.52□□□□□ -0.73
SF3B3-204ENST00000563739 LRRN3Q9H3W5 708 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 CRYBG3Q68DQ2 2970 aa10.52□□□□□ -0.73
SF3B3-204ENST00000563739 SHANK1Q9Y566 2161 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 HSF2BPO75031 334 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 LETM1O95202 739 aaPredicted RBP10.51□□□□□ -0.73
SF3B3-204ENST00000563739 ANXA6P08133 673 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 GLI1P08151 1106 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 SLC2A3P11169 496 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 CCL4P13236 92 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 EIF4A3P38919 411 aaKnown RBP10.51□□□□□ -0.73
SF3B3-204ENST00000563739 HK3P52790 923 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 KRT83P78385 493 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 NUCB2P80303 420 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 NME3Q13232 169 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 CARD16Q5EG05 197 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 MANEAQ5SRI9 462 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 MANEALQ5VSG8 457 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 SLC26A9Q7LBE3 791 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 SPRED1Q7Z699 444 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 TRIM59Q8IWR1 403 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 ZNF397Q8NF99 534 aaPredicted RBP10.51□□□□□ -0.73
SF3B3-204ENST00000563739 BTN2A2Q8WVV5 523 aa10.51□□□□□ -0.73
SF3B3-204ENST00000563739 TSACCQ96A04 125 aaPredicted RBP10.51□□□□□ -0.73
SF3B3-204ENST00000563739 PPP1R16AQ96I34 528 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms