RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 AMD1P17707 334 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 PSMC3P17980 439 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 STK19P49842 368 aaPredicted RBP9.34□□□□□ -0.91
VPS39-205ENST00000562258 ARSIQ5FYB1 569 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 MYO19Q96H55 970 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 FOXP3Q9BZS1 431 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 VRTNQ9H8Y1 702 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 WHRNQ9P202 907 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 FZD10Q9ULW2 581 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 CIB2O75838 187 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 MTA2O94776 668 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 PRNPP04156 253 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 LPOP22079 712 aaPredicted RBP9.34□□□□□ -0.91
VPS39-205ENST00000562258 FGFR3P22607 806 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 SLC8A1P32418 973 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 HALP42357 657 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 TPD52P55327 224 aaPredicted RBP9.34□□□□□ -0.91
VPS39-205ENST00000562258 GUCY1A3Q02108 690 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 MDM1Q8TC05 714 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 ELMO1Q92556 727 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 STMN2Q93045 179 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 AP2M1Q96CW1 435 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 GGT7Q9UJ14 662 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 CD207Q9UJ71 328 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 MFHAS1Q9Y4C4 1052 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 M0QZQ0 153 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 TMCC1O94876 653 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 ANP32DO95626 131 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 POP4O95707 220 aaKnown RBP9.33□□□□□ -0.92
VPS39-205ENST00000562258 APOA4P06727 396 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 HNRNPA1P09651 372 aaKnown RBP eCLIP9.33□□□□□ -0.92
VPS39-205ENST00000562258 NPY2RP49146 381 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 NOMO1Q15155 1222 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 PLA2G4EQ3MJ16 856 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 KBTBD12Q3ZCT8 623 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 MS4A13Q5J8X5 152 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 C6orf10Q5SRN2 563 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 FNBP1LQ5T0N5 605 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 ZNF598Q86UK7 904 aaKnown RBP9.33□□□□□ -0.92
VPS39-205ENST00000562258 LRRC49Q8IUZ0 686 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 SUGP1Q8IWZ8 645 aaKnown RBP9.33□□□□□ -0.92
VPS39-205ENST00000562258 C2orf73Q8N5S3 287 aaPredicted RBP9.33□□□□□ -0.92
VPS39-205ENST00000562258 NPY6RQ99463 290 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 TRIM55Q9BYV6 548 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 NDOR1Q9UHB4 597 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 LAMB2P55268 1798 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.33□□□□□ -0.92
VPS39-205ENST00000562258 OR2AG2A6NM03 316 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.33□□□□□ -0.92
VPS39-205ENST00000562258 SKAP2O75563 359 aaPredicted RBP9.33□□□□□ -0.92
VPS39-205ENST00000562258 OR56A5P0C7T3 313 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 MYL2P10916 166 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 HOXD8P13378 290 aaPredicted RBP9.33□□□□□ -0.92
VPS39-205ENST00000562258 ERFP50548 548 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 ENPEPQ07075 957 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 PDE12Q6L8Q7 609 aaKnown RBP9.33□□□□□ -0.92
VPS39-205ENST00000562258 UGT3A1Q6NUS8 523 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 MTSS1LQ765P7 747 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 CCNJLQ8IV13 435 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 SPATA6LQ8N4H0 392 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 RFWD2Q8NHY2 731 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 ITFG1Q8TB96 612 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 TBATAQ96M53 351 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 OSBPL6Q9BZF3 934 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 SMOC2Q9H3U7 446 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 DPEP2Q9H4A9 486 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 MTG2Q9H4K7 406 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 FAM124BQ9H5Z6 455 aaPredicted RBP9.33□□□□□ -0.92
VPS39-205ENST00000562258 TMEM120BA0PK00 339 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 A6NNZ2 444 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 FAM72CH0Y354 149 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 TIMM44O43615 452 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 KATNA1O75449 491 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 FAM163BP0C2L3 166 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 AARSP49588 968 aaKnown RBP eCLIP9.33□□□□□ -0.92
VPS39-205ENST00000562258 AIF1P55008 147 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 PPP2R2AP63151 447 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 UBE3AQ05086 875 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 ABRQ12979 859 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 TUBB8Q3ZCM7 444 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 FAM72AQ5TYM5 149 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 AGAP9Q5VTM2 703 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 FAM72DQ6L9T8 149 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 RPAINQ86UA6 219 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 FAM72BQ86X60 149 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 TCEAL8Q8IYN2 117 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 ZNF567Q8N184 647 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 ALLCQ8N6M5 410 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 HIPK4Q8NE63 616 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 DDX1Q92499 740 aaKnown RBP9.33□□□□□ -0.92
VPS39-205ENST00000562258 HLA-CQ95604 372 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 SERAC1Q96JX3 654 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 ATP6V1G3Q96LB4 118 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 FAM167BQ9BTA0 163 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 CHRAC1Q9NRG0 131 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 IMP3Q9NV31 184 aaKnown RBP9.33□□□□□ -0.92
VPS39-205ENST00000562258 FBXL12Q9NXK8 326 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 TAS2R13Q9NYV9 303 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 GRID1Q9ULK0 1009 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 APOBEC2Q9Y235 224 aaKnown RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms