RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 C3orf38Q5JPI3 329 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 FAXCQ5TGI0 409 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 GUSBP11Q6P575 273 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 BNIPLQ7Z465 357 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 ZNF677Q86XU0 584 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 WDR36Q8NI36 951 aaKnown RBP9.31□□□□□ -0.92
HDDC3-204ENST00000559834 CXorf40AQ8TE69 158 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 SNRNP27Q8WVK2 155 aaKnown RBP9.31□□□□□ -0.92
HDDC3-204ENST00000559834 CASKIN2Q8WXE0 1202 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 CPA5Q8WXQ8 436 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 ARHGEF2Q92974 986 aaKnown RBP9.31□□□□□ -0.92
HDDC3-204ENST00000559834 CENPTQ96BT3 561 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 ATXN7L3BQ96GX2 97 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 VCPIP1Q96JH7 1222 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 BOCQ9BWV1 1114 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 STK33Q9BYT3 514 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 CPNE5Q9HCH3 593 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 ASCL3Q9NQ33 180 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 TMEM248Q9NWD8 314 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 APOBEC3BQ9UH17 382 aaKnown RBP9.31□□□□□ -0.92
HDDC3-204ENST00000559834 DACH1Q9UI36 760 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 KLF15Q9UIH9 416 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 PADI4Q9UM07 663 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 DOLKQ9UPQ8 538 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 ENTPD2Q9Y5L3 495 aa9.31□□□□□ -0.92
HDDC3-204ENST00000559834 NYNRINQ9P2P1 1898 aaKnown RBP9.31□□□□□ -0.92
HDDC3-204ENST00000559834 LMO7DNF2Z398 122 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 TMX2-CTNND1H3BSU7 103 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 J3QKU1 62 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 AREL1O15033 823 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 MUSKO15146 869 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 SPINT1O43278 529 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 BUB1O43683 1085 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 KDELR3O43731 214 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 RAMP2O60895 175 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 ZIC2O95409 532 aaPredicted RBP9.3□□□□□ -0.92
HDDC3-204ENST00000559834 CD160O95971 181 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 UGT2B4P06133 528 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 PLEKP08567 350 aaPredicted RBP9.3□□□□□ -0.92
HDDC3-204ENST00000559834 UCHL3P15374 230 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 XPAP23025 273 aaPredicted RBP9.3□□□□□ -0.92
HDDC3-204ENST00000559834 GKP32189 559 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 EIF4A3P38919 411 aaKnown RBP9.3□□□□□ -0.92
HDDC3-204ENST00000559834 ABL2P42684 1182 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 PEX5P50542 639 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 SUOXP51687 545 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 PPARDQ03181 441 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 SPIDRQ14159 915 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 C2CD6Q53TS8 623 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 MIIPQ5JXC2 388 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 C6orf132Q5T0Z8 1188 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 ARTNQ5T4W7 220 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 NAA35Q5VZE5 725 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 TRNP1Q6NT89 227 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 DPY19L2P1Q6NXN4 242 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 FOXR1Q6PIV2 292 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 LVRNQ6Q4G3 990 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 GDPD4Q6W3E5 623 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 STRADAQ7RTN6 431 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 NOP9Q86U38 636 aaKnown RBP9.3□□□□□ -0.92
HDDC3-204ENST00000559834 VPS36Q86VN1 386 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 ZNF354CQ86Y25 554 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 PHACTR4Q8IZ21 702 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 SDR16C5Q8N3Y7 309 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 FSTL5Q8N475 847 aaPredicted RBP9.3□□□□□ -0.92
HDDC3-204ENST00000559834 OR6K2Q8NGY2 324 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 RXFP2Q8WXD0 754 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 TBC1D31Q96DN5 1066 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 GDAP1L1Q96MZ0 367 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 KLHL32Q96NJ5 620 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 CAAP1Q9H8G2 361 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 METTL5Q9NRN9 209 aaKnown RBP9.3□□□□□ -0.92
HDDC3-204ENST00000559834 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.3□□□□□ -0.92
HDDC3-204ENST00000559834 DNAI1Q9UI46 699 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 FHOD1Q9Y613 1164 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 ACTL7AQ9Y615 435 aa9.3□□□□□ -0.92
HDDC3-204ENST00000559834 CCDC187A0A096LP49 1063 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 K7ENP7 123 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 YY2O15391 372 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 MMP20O60882 483 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 GCATO75600 419 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 LRIG2O94898 1065 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 TNFSF15O95150 251 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 MMEP08473 750 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 ALPIP09923 528 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 C6P13671 934 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 CTSEP14091 401 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 TSHRP16473 764 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 MMP8P22894 467 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 HTR1BP28222 390 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 PTPN9P43378 593 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 NOMO3P69849 1222 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 ELP6Q0PNE2 266 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 C1orf61Q13536 156 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 GRM3Q14832 879 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 ELOCQ15369 112 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 CDO1Q16878 200 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 CCDC14Q49A88 953 aa9.29□□□□□ -0.92
HDDC3-204ENST00000559834 INO80DQ53TQ3 878 aaPredicted RBP9.29□□□□□ -0.92
HDDC3-204ENST00000559834 CT47A1Q5JQC4 288 aaPredicted RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms