RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 C8orf48Q96LL4 319 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 RTKNQ9BST9 563 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 CCDC28BQ9BUN5 200 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 SLC39A8Q9C0K1 460 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 SLC25A51Q9H1U9 297 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 RRAGCQ9HB90 399 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 TCF7L2Q9NQB0 619 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 OLA1Q9NTK5 396 aaKnown RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 TMLHEQ9NVH6 421 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 RBM22Q9NW64 420 aaKnown RBP eCLIP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 NMRK1Q9NWW6 199 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 BCAP29Q9UHQ4 241 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 ARHGAP26Q9UNA1 814 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 TLR6Q9Y2C9 796 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 ACOT9Q9Y305 439 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 FAM95CA0A1B0GW59 222 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 GOLGA8CPA6NN73 597 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 KCNU1A8MYU2 1149 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 ENPP3O14638 875 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 SYN3O14994 580 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 HDAC3O15379 428 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 NPHS1O60500 1241 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 PAPSS2O95340 614 aaPredicted RBP7.35□□□□□ -1.23
VPS13C-206ENST00000558338 HLA-DQB2P05538 268 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 ASGR1P07306 291 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 RHOQP17081 205 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 TPH1P17752 444 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 NCF2P19878 526 aaPredicted RBP7.35□□□□□ -1.23
VPS13C-206ENST00000558338 CPOXP36551 454 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 MAGEA11P43364 429 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 NUMBP49757 651 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 TUBP50607 506 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 RPL14P50914 215 aaKnown RBP7.35□□□□□ -1.23
VPS13C-206ENST00000558338 RENBPP51606 427 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 CLCN5P51795 746 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 SESN3P58005 492 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 IRF9Q00978 393 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 BTKQ06187 659 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 CRHR2Q13324 411 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 HNRNPDQ14103 355 aaKnown RBP7.35□□□□□ -1.23
VPS13C-206ENST00000558338 HERC3Q15034 1050 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 GSTA3Q16772 222 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 PAN2Q504Q3 1202 aaKnown RBP7.35□□□□□ -1.23
VPS13C-206ENST00000558338 TRIM68Q6AZZ1 485 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 OTOP3Q7RTS5 596 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 CTU1Q7Z7A3 348 aaKnown RBP7.35□□□□□ -1.23
VPS13C-206ENST00000558338 ZNF598Q86UK7 904 aaKnown RBP7.35□□□□□ -1.23
VPS13C-206ENST00000558338 TNS4Q8IZW8 715 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 NUP93Q8N1F7 819 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 UMODL1-AS1Q8N2C9 162 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 ZNF781Q8N8C0 355 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 C2CD4AQ8NCU7 369 aaPredicted RBP7.35□□□□□ -1.23
VPS13C-206ENST00000558338 KLHDC9Q8NEP7 349 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 SCAMP5Q8TAC9 235 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 STYXQ8WUJ0 223 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 TRIB2Q92519 343 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 CASP10Q92851 521 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 MIEF2Q96C03 454 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 FAR2Q96K12 515 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 PANX3Q96QZ0 392 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 SERPINI1Q99574 410 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 GATA5Q9BWX5 397 aaPredicted RBP7.35□□□□□ -1.23
VPS13C-206ENST00000558338 C1QTNF1Q9BXJ1 281 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.35□□□□□ -1.23
VPS13C-206ENST00000558338 ZCWPW1Q9H0M4 648 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 VCXQ9H320 206 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 COG4Q9H9E3 785 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 CAB39LQ9H9S4 337 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 ARNT2Q9HBZ2 717 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 RGS18Q9NS28 235 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 COMMD8Q9NX08 183 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 SLC7A8Q9UHI5 535 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 PRPF19Q9UMS4 504 aaKnown RBP7.35□□□□□ -1.23
VPS13C-206ENST00000558338 CDYLQ9Y232 598 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 COMMD10Q9Y6G5 202 aa7.35□□□□□ -1.23
VPS13C-206ENST00000558338 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.35□□□□□ -1.23
VPS13C-206ENST00000558338 A0A1W2PQH9 124 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 TRPC5OSA6NMA1 111 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 MATN2O00339 956 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 LCE2BO14633 110 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 CA12O43570 354 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 TBX10O75333 385 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 OAZ2O95190 189 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 RTN3O95197 1032 aaPredicted RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SLC35E2BP0CK96 405 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 THRAP10827 490 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 COX4I1P13073 169 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 ANPEPP15144 967 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 HOXB8P17481 243 aaPredicted RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 YY1P25490 414 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 GRIA4P48058 902 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 ARCN1P48444 511 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 PAPOLAP51003 745 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 MLLT6P55198 1093 aaPredicted RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 DNAJB13P59910 316 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 XIAPP98170 497 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 TNK2Q07912 1038 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 POU6F1Q14863 301 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SMAD1Q15797 465 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SH2D4BQ5SQS7 431 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms