RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ZNF470Q6ECI4 717 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 PRRT2Q7Z6L0 340 aaPredicted RBP12.47□□□□□ -0.41
LDLR-205ENST00000557933 ZC3HC1Q86WB0 502 aaKnown RBP12.47□□□□□ -0.41
LDLR-205ENST00000557933 TICAM1Q8IUC6 712 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 PARP8Q8N3A8 854 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 KDM1BQ8NB78 822 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 DNERQ8NFT8 737 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 HEXDCQ8WVB3 486 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 ITFG2Q969R8 447 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 DRC3Q9H069 523 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 STN1Q9H668 368 aaKnown RBP12.47□□□□□ -0.41
LDLR-205ENST00000557933 ELP3Q9H9T3 547 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 OLAHQ9NV23 265 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 TMEM30AQ9NV96 361 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 SETD4Q9NVD3 440 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 DDIT4Q9NX09 232 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 RRN3Q9NYV6 651 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 TSR3Q9UJK0 312 aaKnown RBP12.47□□□□□ -0.41
LDLR-205ENST00000557933 CSADQ9Y600 493 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 TTC3P53804 2025 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 A0A1W2PPW3 197 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 SDHDO14521 159 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 DPYSL4O14531 572 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 MTHFD1P11586 935 aaKnown RBP12.47□□□□□ -0.41
LDLR-205ENST00000557933 MYL4P12829 197 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 NCK1P16333 377 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 NR1H2P55055 460 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 CD300CQ08708 224 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 BST2Q10589 180 aaKnown RBP12.47□□□□□ -0.41
LDLR-205ENST00000557933 APOFQ13790 326 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 FASTKQ14296 549 aaKnown RBP12.47□□□□□ -0.41
LDLR-205ENST00000557933 ANO4Q32M45 955 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 FUT11Q495W5 492 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 TMEM259Q4ZIN3 620 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 GPR107Q5VW38 600 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 SLC26A9Q7LBE3 791 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 PSTKQ8IV42 348 aaKnown RBP12.47□□□□□ -0.41
LDLR-205ENST00000557933 CHERPQ8IWX8 916 aaKnown RBP12.47□□□□□ -0.41
LDLR-205ENST00000557933 AHI1Q8N157 1196 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 RMND5BQ96G75 393 aaPredicted RBP12.47□□□□□ -0.41
LDLR-205ENST00000557933 FAM167AQ96KS9 214 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 SIKE1Q9BRV8 207 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 LTB4R2Q9NPC1 389 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 CNOT6Q9ULM6 557 aaKnown RBP12.47□□□□□ -0.41
LDLR-205ENST00000557933 SLC45A1Q9Y2W3 748 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 OR51F1A6NGY5 319 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 GPC4O75487 556 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 RECQL4O94761 1208 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 ZFXP17010 805 aaPredicted RBP12.46□□□□□ -0.41
LDLR-205ENST00000557933 ATP6V1B2P21281 511 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 MATKP42679 507 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 DBN1Q16643 649 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 SPANXN3Q5MJ09 141 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 SCIMPQ6UWF3 145 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 CHSY3Q70JA7 882 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 CLEC14AQ86T13 490 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 SNX29P2Q8IUI4 249 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 RNF34Q969K3 372 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 ZFP42Q96MM3 310 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 PAIP1Q9H074 479 aaKnown RBP12.46□□□□□ -0.41
LDLR-205ENST00000557933 SNX25Q9H3E2 840 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 LRRC4Q9HBW1 653 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 ANK1P16157 1881 aa12.46□□□□□ -0.41
LDLR-205ENST00000557933 RNF103-CHMP3A0A140T963 221 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.46□□□□□ -0.42
LDLR-205ENST00000557933 FAM95CA0A1B0GW59 222 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 MEIS3P2A8K0S8 358 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 NR5A2O00482 541 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 ZSCAN9O15535 394 aaPredicted RBP12.46□□□□□ -0.42
LDLR-205ENST00000557933 STRNO43815 780 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 TADA2AO75478 443 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 AP2A1O95782 977 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 OXTRP30559 389 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 AFF1P51825 1210 aaKnown RBP12.46□□□□□ -0.42
LDLR-205ENST00000557933 TKTL1P51854 596 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 BCAT1P54687 386 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 XIAPP98170 497 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 CDK18Q07002 472 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 NSUN2Q08J23 767 aaKnown RBP eCLIP12.46□□□□□ -0.42
LDLR-205ENST00000557933 PPP1R8Q12972 351 aaKnown RBP12.46□□□□□ -0.42
LDLR-205ENST00000557933 ZIK1Q3SY52 487 aaPredicted RBP12.46□□□□□ -0.42
LDLR-205ENST00000557933 REP15Q6BDI9 236 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 KLC3Q6P597 504 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 CATSPER4Q7RTX7 472 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 TMEM135Q86UB9 458 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 PIM3Q86V86 326 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 FIBCD1Q8N539 461 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 ADCY4Q8NFM4 1077 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 SREK1Q8WXA9 508 aaKnown RBP12.46□□□□□ -0.42
LDLR-205ENST00000557933 KCNA7Q96RP8 456 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 C1QTNF1Q9BXJ1 281 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 ULBP1Q9BZM6 244 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 ZNF696Q9H7X3 374 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 CPA4Q9UI42 421 aa12.46□□□□□ -0.42
LDLR-205ENST00000557933 FNDC3AQ9Y2H6 1198 aaKnown RBP12.46□□□□□ -0.42
LDLR-205ENST00000557933 LGALS2P05162 132 aa12.45□□□□□ -0.42
LDLR-205ENST00000557933 MCF2P10911 925 aa12.45□□□□□ -0.42
LDLR-205ENST00000557933 ATICP31939 592 aa12.45□□□□□ -0.42
LDLR-205ENST00000557933 SLC1A2P43004 574 aa12.45□□□□□ -0.42
LDLR-205ENST00000557933 PRKAA1Q13131 559 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms