RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 ARL8BQ9NVJ2 186 aa3.29□□□□□ -1.88
TRAV28-201ENST00000557548 PARPBPQ9NWS1 579 aa3.29□□□□□ -1.88
TRAV28-201ENST00000557548 PLK2Q9NYY3 685 aa3.29□□□□□ -1.88
TRAV28-201ENST00000557548 TFCP2L1Q9NZI6 479 aa3.29□□□□□ -1.88
TRAV28-201ENST00000557548 OGFRQ9NZT2 677 aa3.29□□□□□ -1.88
TRAV28-201ENST00000557548 ABI3Q9P2A4 366 aa3.29□□□□□ -1.88
TRAV28-201ENST00000557548 MARCH4Q9P2E8 410 aaPredicted RBP3.29□□□□□ -1.88
TRAV28-201ENST00000557548 CNOT8Q9UFF9 292 aaKnown RBP3.29□□□□□ -1.88
TRAV28-201ENST00000557548 ST6GALNAC2Q9UJ37 374 aa3.29□□□□□ -1.88
TRAV28-201ENST00000557548 PADI1Q9ULC6 663 aa3.29□□□□□ -1.88
TRAV28-201ENST00000557548 TCAF1Q9Y4C2 921 aa3.29□□□□□ -1.88
TRAV28-201ENST00000557548 CLDN16Q9Y5I7 305 aa3.29□□□□□ -1.88
TRAV28-201ENST00000557548 EMSYQ7Z589 1322 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 PIPSLA2A3N6 862 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 OR2A25A4D2G3 310 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 CXorf65A6NEN9 183 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 URADA6NGE7 173 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 CBY3A6NI87 242 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 USP17L23D6RBM5 183 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 NPIPB11E5RHQ5 1161 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 CHL1O00533 1208 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 PSMD10O75832 226 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 TPPPO94811 219 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 NKX2-2O95096 273 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 TGDSO95455 350 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 HLA-DQA2P01906 255 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 QDPRP09417 244 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 ELFN1P0C7U0 828 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 MYBL1P10243 752 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 SCG2P13521 617 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 AKR1A1P14550 325 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 CALRP27797 417 aaKnown RBP3.28□□□□□ -1.88
TRAV28-201ENST00000557548 CDAP32320 146 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 CIITAP33076 1130 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 PIK3CAP42336 1068 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 MSH2P43246 934 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 CCT8P50990 548 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 CYP2J2P51589 502 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 ZNF41P51814 821 aaPredicted RBP3.28□□□□□ -1.88
TRAV28-201ENST00000557548 STAT2P52630 851 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 GALCP54803 685 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 CLDN2P57739 230 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 YWHAZP63104 245 aaKnown RBP3.28□□□□□ -1.88
TRAV28-201ENST00000557548 TAP1Q03518 808 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 EFEMP1Q12805 493 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 IKQ13123 557 aaPredicted RBP3.28□□□□□ -1.88
TRAV28-201ENST00000557548 CAMK2DQ13557 499 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 LARS2Q15031 903 aaKnown RBP3.28□□□□□ -1.88
TRAV28-201ENST00000557548 C5orf22Q49AR2 442 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 TCP11X2Q5H9J9 407 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 C9orf152Q5JTZ5 239 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 AARS2Q5JTZ9 985 aaKnown RBP3.28□□□□□ -1.88
TRAV28-201ENST00000557548 KRBOX4Q5JUW0 171 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 SLC10A5Q5PT55 438 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 ZNF362Q5T0B9 420 aaPredicted RBP3.28□□□□□ -1.88
TRAV28-201ENST00000557548 C10orf76Q5T2E6 689 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 ABHD17BQ5VST6 288 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 JADE1Q6IE81 842 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 LRRC8EQ6NSJ5 796 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 SHQ1Q6PI26 577 aaKnown RBP3.28□□□□□ -1.88
TRAV28-201ENST00000557548 KCNV1Q6PIU1 500 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 ZNF474Q6S9Z5 364 aaPredicted RBP3.28□□□□□ -1.88
TRAV28-201ENST00000557548 GLDNQ6ZMI3 551 aaPredicted RBP3.28□□□□□ -1.88
TRAV28-201ENST00000557548 Q6ZNX1 250 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 TFAP2DQ7Z6R9 452 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 C1orf210Q8IVY1 113 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 KIAA2013Q8IYS2 634 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 OR8H3Q8N146 312 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 SYT2Q8N9I0 419 aaPredicted RBP3.28□□□□□ -1.88
TRAV28-201ENST00000557548 TDRD5Q8NAT2 981 aaKnown RBP3.28□□□□□ -1.88
TRAV28-201ENST00000557548 OR52N4Q8NGI2 321 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 ZNF653Q96CK0 615 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 ARHGEF26Q96DR7 871 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 TEFMQ96QE5 360 aaKnown RBP3.28□□□□□ -1.88
TRAV28-201ENST00000557548 PAFAH2Q99487 392 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 NCAPGQ9BPX3 1015 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 WDR11Q9BZH6 1224 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 NUAK2Q9H093 628 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 PLK3Q9H4B4 646 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 ASAH2Q9NR71 780 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 ABCF3Q9NUQ8 709 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 SETD4Q9NVD3 440 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 ARGLU1Q9NWB6 273 aaPredicted RBP3.28□□□□□ -1.88
TRAV28-201ENST00000557548 GRHL1Q9NZI5 618 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 WDR35Q9P2L0 1181 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 ANAPC5Q9UJX4 755 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 FZD1Q9UP38 647 aa3.28□□□□□ -1.88
TRAV28-201ENST00000557548 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.28□□□□□ -1.88
TRAV28-201ENST00000557548 FLT1P17948 1338 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 TMEM247A6NEH6 219 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 H0Y626 953 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 TAF4O00268 1085 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 MSI1O43347 362 aaKnown RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 SLC25A17O43808 307 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 HS6ST1O60243 411 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 DIAPH2O60879 1101 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 NDUFS3O75489 264 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 GCATO75600 419 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 TFP02787 698 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 ITGB3P05106 788 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms