RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 ANKRD60Q9BZ19 345 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 MROH8Q9H579 483 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 C8orf4Q9NR00 106 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 VPS45Q9NRW7 570 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 DDX18Q9NVP1 670 aaKnown RBP16.47■□□□□ 0.23
SHMT2-232ENST00000557487 WBP1LQ9NX94 342 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 SLC8A2Q9UPR5 921 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 PEX10O60683 326 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 F9P00740 461 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 LRP8Q14114 963 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 KRT80Q6KB66 452 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 NOTUMQ6P988 496 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 GADL1Q6ZQY3 521 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 AMIGO2Q86SJ2 522 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 ANKFN1Q8N957 763 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 GOLM1Q8NBJ4 401 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 B3GALNT2Q8NCR0 500 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 ACVR1CQ8NER5 493 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 RMND5BQ96G75 393 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-232ENST00000557487 LPIN3Q9BQK8 851 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 COQ10BQ9H8M1 238 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 MEAF6Q9HAF1 191 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 PIGVQ9NUD9 493 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 FBXW11Q9UKB1 542 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 PCDHGB4Q9UN71 923 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 RNF11Q9Y3C5 154 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 PCDHGB5Q9Y5G0 923 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 A0A0G2JLL6 359 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-232ENST00000557487 PHGDHO43175 533 aaKnown RBP16.46■□□□□ 0.23
SHMT2-232ENST00000557487 HUS1O60921 280 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 TRPA1O75762 1119 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 CD1EP15812 388 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 PAMP19021 973 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 LMO2P25791 158 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 ADARP55265 1226 aaKnown RBP16.46■□□□□ 0.23
SHMT2-232ENST00000557487 NUP107P57740 925 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 CCNA1P78396 465 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 POU4F1Q01851 419 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 NME3Q13232 169 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 PDAP1Q13442 181 aaKnown RBP16.46■□□□□ 0.23
SHMT2-232ENST00000557487 OLIG2Q13516 323 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 GK3PQ14409 553 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 KCTD21Q4G0X4 260 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 PRRT2Q7Z6L0 340 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-232ENST00000557487 GABPB2Q8TAK5 448 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-232ENST00000557487 ATP6V1E2Q96A05 226 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 C18orf25Q96B23 403 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-232ENST00000557487 DNAJC1Q96KC8 554 aaKnown RBP16.46■□□□□ 0.23
SHMT2-232ENST00000557487 PPP1R36Q96LQ0 422 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 UPF3AQ9H1J1 476 aaKnown RBP16.46■□□□□ 0.23
SHMT2-232ENST00000557487 ELP3Q9H9T3 547 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 CACNA2D2Q9NY47 1150 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 OTOFQ9HC10 1997 aa16.46■□□□□ 0.23
SHMT2-232ENST00000557487 A0A0J9YVX5 310 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 FAM95CA0A1B0GW59 222 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 C7orf72A4D263 438 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 H3BSA7 217 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 STX16-NPEPL1H3BU86 382 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 ANXA9O76027 345 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 AHSGP02765 367 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 BMP2P12643 396 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 AXLP30530 894 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 HOXA11P31270 313 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-232ENST00000557487 ABCG1P45844 678 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 ACADVLP49748 655 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 ZBTB17Q13105 803 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 DGKDQ16760 1214 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 POTEHQ6S545 545 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 ERO1BQ86YB8 467 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 RNF148Q8N7C7 305 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 CCNYL1Q8N7R7 359 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 TRMOQ9BU70 441 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 TRPV6Q9H1D0 765 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 CLK4Q9HAZ1 481 aaKnown RBP16.45■□□□□ 0.22
SHMT2-232ENST00000557487 TBCCD1Q9NVR7 557 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 ARMC1Q9NVT9 282 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 CD300AQ9UGN4 299 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 HES2Q9Y543 173 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 TRIM64CA6NLI5 447 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 KCNU1A8MYU2 1149 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 PSMD12O00232 456 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-232ENST00000557487 UBDO15205 165 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 SNRPB2P08579 225 aaKnown RBP16.45■□□□□ 0.22
SHMT2-232ENST00000557487 IMPDH2P12268 514 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 KCNE1P15382 129 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 TKTP29401 623 aaKnown RBP16.45■□□□□ 0.22
SHMT2-232ENST00000557487 MSX2P35548 267 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-232ENST00000557487 GJA5P36382 358 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 GLRBP48167 497 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 TM4SF4P48230 202 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 RAB15P59190 212 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 ESRRGP62508 458 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 PITX1P78337 314 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-232ENST00000557487 ILF2Q12905 390 aaKnown RBP16.45■□□□□ 0.22
SHMT2-232ENST00000557487 FASTKQ14296 549 aaKnown RBP16.45■□□□□ 0.22
SHMT2-232ENST00000557487 LPIN1Q14693 890 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 SPATS1Q496A3 300 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 OLFML2BQ68BL8 750 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 REP15Q6BDI9 236 aa16.45■□□□□ 0.22
SHMT2-232ENST00000557487 PPP4R4Q6NUP7 873 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms