RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 LETMD1Q6P1Q0 360 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 ADCK1Q86TW2 530 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 TAGAPQ8N103 731 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 SFRP1Q8N474 314 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 ARL6IP6Q8N6S5 226 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 USP13Q92995 863 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-226ENST00000556825 SLC35C1Q96A29 364 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 LENG8Q96PV6 779 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-226ENST00000556825 TSEN34Q9BSV6 310 aaKnown RBP13.95□□□□□ -0.18
SHMT2-226ENST00000556825 OR51B5Q9H339 312 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 ASNSD1Q9NWL6 643 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 AFG3L2Q9Y4W6 797 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 ATRNL1Q5VV63 1379 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 CFLARO15519 480 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 ZBTB14O43829 449 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 PTP4A3O75365 173 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 IFI30P13284 250 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 PRKAR1BP31321 381 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 EPHX2P34913 555 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 HTR7P34969 479 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 NLRP11P59045 1033 aaKnown RBP13.95□□□□□ -0.18
SHMT2-226ENST00000556825 CD83Q01151 205 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 GPS1Q13098 491 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 CTF1Q16619 201 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 HIF1AQ16665 826 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 MTERF2Q49AM1 385 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 TEDDM1Q5T9Z0 273 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 INTS11Q5TA45 600 aaKnown RBP13.95□□□□□ -0.18
SHMT2-226ENST00000556825 CACHD1Q5VU97 1274 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 GDPD3Q7L5L3 318 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 KRT77Q7Z794 578 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 AMIGO1Q86WK6 493 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 RNF148Q8N7C7 305 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 FNDC5Q8NAU1 212 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 DAGLBQ8NCG7 672 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 OR8K3Q8NH51 312 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 TAS1R2Q8TE23 839 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 SEPT8Q92599 483 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 FBXW5Q969U6 566 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 SLCO4A1Q96BD0 722 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 B3GALT6Q96L58 329 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 FAM118BQ9BPY3 351 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 KCTD14Q9BQ13 255 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-226ENST00000556825 TMEM168Q9H0V1 697 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 BAG5Q9UL15 447 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 PCDHGC3Q9UN70 934 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 MAPRE3Q9UPY8 281 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 RAD54BQ9Y620 910 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 PLCH1Q4KWH8 1693 aa13.95□□□□□ -0.18
SHMT2-226ENST00000556825 ZNF487B1APH4 448 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 TDP2O95551 362 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 GZMAP12544 262 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 ITGALP20701 1170 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 YAP1P46937 504 aaKnown RBP13.94□□□□□ -0.18
SHMT2-226ENST00000556825 MRPS5P82675 430 aaKnown RBP13.94□□□□□ -0.18
SHMT2-226ENST00000556825 TRIM25Q14258 630 aaKnown RBP13.94□□□□□ -0.18
SHMT2-226ENST00000556825 GALEQ14376 348 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 CATSPEREQ5SY80 951 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 PPP1R26Q5T8A7 1209 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-226ENST00000556825 POLNQ7Z5Q5 900 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 SVOPQ8N4V2 548 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 URGCPQ8TCY9 931 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 SLC20A1Q8WUM9 679 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 TOP1MTQ969P6 601 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 SGK3Q96BR1 496 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 MMP19Q99542 508 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 BCL7BQ9BQE9 202 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 RNPEPQ9H4A4 650 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 EFCAB1Q9HAE3 211 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 PCDH10Q9P2E7 1040 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 WARS2Q9UGM6 360 aaKnown RBP13.94□□□□□ -0.18
SHMT2-226ENST00000556825 MAD2L2Q9UI95 211 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 PCDHGA7Q9Y5G6 932 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 CSNK1G3Q9Y6M4 447 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 LAMB1P07942 1786 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 RGSL1A5PLK6 1076 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 SAC3D1A6NKF1 404 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 TRIM49D1C9J1S8 452 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 E7ENX8 843 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 M0R3G1 203 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 TRIM38O00635 465 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 TBX1O43435 398 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 CPNE3O75131 537 aaKnown RBP13.94□□□□□ -0.18
SHMT2-226ENST00000556825 SEC24AO95486 1093 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 PRKCBP05771 671 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 INHBAP08476 426 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 ZSCAN5DPP0CG00 497 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 IL7P13232 177 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 GRK3P35626 688 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 NT5C2P49902 561 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 ARSEP51690 589 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 UBE3AQ05086 875 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 DDR2Q16832 855 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 FAM214AQ32MH5 1076 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 WDR44Q5JSH3 913 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 PMF1Q6P1K2 205 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 ZCCHC23Q6ZST2 131 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 SPATC1Q76KD6 591 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 HDDC2Q7Z4H3 204 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 PRSS42Q7Z5A4 293 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms