RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 FTH1P19P0C7X4 201 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 IL1R2P27930 398 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 EPHA8P29322 1005 aaPredicted RBP16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 RHOAP61586 193 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 SLC25A11Q02978 314 aaKnown RBP16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 FOXC1Q12948 553 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 SLC18A3Q16572 532 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 ASTE1Q2TB18 679 aaPredicted RBP16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 GDPD4Q6W3E5 623 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 SPATS2Q86XZ4 545 aaKnown RBP16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 VSTM4Q8IW00 320 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 NPWQ8N729 165 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 DENND6BQ8NEG7 585 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 OR8K1Q8NGG5 319 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 FAM71BQ8TC56 605 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 SETD7Q8WTS6 366 aaKnown RBP16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 CPLX3Q8WVH0 158 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 IFT43Q96FT9 208 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 FEM1CQ96JP0 617 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 TUBGCP5Q96RT8 1024 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 NUP85Q9BW27 656 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 SLC39A8Q9C0K1 460 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 TOR4AQ9NXH8 423 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 UVRAGQ9P2Y5 699 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 ANAPC7Q9UJX3 599 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 APOBEC2Q9Y235 224 aaKnown RBP16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 SPEGQ15772 3267 aa16.27■□□□□ 0.19
CCDC88C-209ENST00000554872 KMT2BQ9UMN6 2715 aaPredicted RBP16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 SPINT1O43278 529 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 DAPK3O43293 454 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 PCDH8O95206 1070 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 UGT2B4P06133 528 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 ABL2P42684 1182 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 PAPOLAP51003 745 aaKnown RBP16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 CYTH1Q15438 398 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 PPP6R3Q5H9R7 873 aaPredicted RBP16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 CCDC122Q5T0U0 273 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 ATXN7L2Q5T6C5 722 aaPredicted RBP16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 TMCO4Q5TGY1 634 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 SEL1L3Q68CR1 1132 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 KYAT3Q6YP21 454 aaKnown RBP16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 KANSL1Q7Z3B3 1105 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 POLNQ7Z5Q5 900 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 ZNF354CQ86Y25 554 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 DCP2Q8IU60 420 aaKnown RBP16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 RHBDD1Q8TEB9 315 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 SPOCK2Q92563 424 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 TSC1Q92574 1164 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 ZNF641Q96N77 438 aaPredicted RBP16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 ZNF599Q96NL3 588 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 C1QTNF2Q9BXJ5 285 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 TMEM121BQ9BXQ6 578 aaPredicted RBP16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 BTBD3Q9Y2F9 522 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 HS3ST3A1Q9Y663 406 aa16.26■□□□□ 0.19
CCDC88C-209ENST00000554872 A6NNZ2 444 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 J3KR12 359 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 MYO1FO00160 1098 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 KCNK3O14649 394 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 TNFSF14O43557 240 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 RARAP10276 462 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 PRLRP16471 622 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 GKP32189 559 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 EIF4A3P38919 411 aaKnown RBP16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 ARL4AP40617 200 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 IL10RBQ08334 325 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 NSUN2Q08J23 767 aaKnown RBP eCLIP16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 FGL2Q14314 439 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 LEKR1Q6ZMV7 388 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 GCNT7Q6ZNI0 430 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 RYBPQ8N488 228 aaPredicted RBP16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 OR6K2Q8NGY2 324 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 KLHDC7BQ96G42 594 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 CELF6Q96J87 481 aaKnown RBP16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 KLHL32Q96NJ5 620 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 CSPG4P5Q96PW8 444 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 SCNM1Q9BWG6 230 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 SLC17A9Q9BYT1 436 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 KLHL11Q9NVR0 708 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 MSRB2Q9Y3D2 182 aa16.25■□□□□ 0.19
CCDC88C-209ENST00000554872 TRPM6Q9BX84 2022 aa16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 MAP1BP46821 2468 aaKnown RBP16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 USP24Q9UPU5 2620 aa16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 TMEM8BA6NDV4 472 aa16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 SLC31A1O15431 190 aa16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 TCF4P15884 667 aa16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 MAN1A1P33908 653 aa16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 BRAT1Q6PJG6 821 aa16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 SARM1Q6SZW1 724 aa16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 ZNF564Q8TBZ8 553 aaPredicted RBP16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 GATA6Q92908 595 aa16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 PSKH2Q96QS6 385 aa16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 KLF6Q99612 283 aaPredicted RBP16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 PCDH18Q9HCL0 1135 aa16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 ABHD10Q9NUJ1 306 aa16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 PCDHGA1Q9Y5H4 931 aa16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 ASPMQ8IZT6 3477 aa16.24■□□□□ 0.19
CCDC88C-209ENST00000554872 DOCK9Q9BZ29 2069 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 TOR1BO14657 336 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 HYAL3O43820 417 aaPredicted RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms