RNA–Protein interactions for RNA: ENST00000554776.5

SCFD1-213, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-213ENST00000554776 HLA-DQA2P01906 255 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 CLEC3BP05452 202 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 LCKP06239 509 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 GALTP07902 379 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 COX7A2P14406 83 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 SCP2P22307 547 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 CHMP24386 653 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 NFKBIAP25963 317 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 CHRNA5P30532 468 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 PBX3P40426 434 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 SKIV2L2P42285 1042 aaKnown RBP3.31□□□□□ -1.88
SCFD1-213ENST00000554776 EFNA5P52803 228 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 ARF3P61204 181 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-213ENST00000554776 IRX6P78412 446 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-213ENST00000554776 ARF1P84077 181 aaKnown RBP3.31□□□□□ -1.88
SCFD1-213ENST00000554776 PDE1CQ14123 709 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-213ENST00000554776 MED22Q15528 200 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 ODF3L2Q3SX64 289 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 C5orf22Q49AR2 442 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 ALG10Q5BKT4 473 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 ALG10BQ5I7T1 473 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 MANEAQ5SRI9 462 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 NAA35Q5VZE5 725 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 NUGGCQ68CJ6 796 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 AADACL2Q6P093 401 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 TMEM81Q6P7N7 255 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 FASTKD5Q7L8L6 764 aaKnown RBP3.31□□□□□ -1.88
SCFD1-213ENST00000554776 CCDC25Q86WR0 208 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 GPSM1Q86YR5 675 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 CPXM2Q8N436 756 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 NSMCE1Q8WV22 266 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 KLHL29Q96CT2 875 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 ZNF419Q96HQ0 510 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-213ENST00000554776 NAF1Q96HR8 494 aaKnown RBP3.31□□□□□ -1.88
SCFD1-213ENST00000554776 NLRP4Q96MN2 994 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 NR1H4Q96RI1 486 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-213ENST00000554776 NUF2Q9BZD4 464 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 FAM234AQ9H0X4 552 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 GHITMQ9H3K2 345 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 HIPK3Q9H422 1215 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 MAP6D1Q9H9H5 199 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 PNRC2Q9NPJ4 139 aaKnown RBP3.31□□□□□ -1.88
SCFD1-213ENST00000554776 EIF2B3Q9NR50 452 aaKnown RBP3.31□□□□□ -1.88
SCFD1-213ENST00000554776 SNTG1Q9NSN8 517 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 RNF146Q9NTX7 359 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 HAUS2Q9NVX0 235 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 BABAM1Q9NWV8 329 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 PPP1R14DQ9NXH3 145 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 HCN3Q9P1Z3 774 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 TBC1D14Q9P2M4 693 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 PLEKHB1Q9UF11 243 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-213ENST00000554776 NRBP1Q9UHY1 535 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 MKLN1Q9UL63 735 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 GPR34Q9UPC5 381 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 LAS1LQ9Y4W2 734 aaKnown RBP3.31□□□□□ -1.88
SCFD1-213ENST00000554776 SQORQ9Y6N5 450 aa3.31□□□□□ -1.88
SCFD1-213ENST00000554776 RSF1Q96T23 1441 aaPredicted RBP3.3□□□□□ -1.88
SCFD1-213ENST00000554776 TDRD9Q8NDG6 1382 aaKnown RBP3.3□□□□□ -1.88
SCFD1-213ENST00000554776 CACNA1IQ9P0X4 2223 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 GOLGA6L10A0A0M3HER8 536 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.3□□□□□ -1.88
SCFD1-213ENST00000554776 GAGE10A6NGK3 116 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 DDTLA6NHG4 134 aaPredicted RBP3.3□□□□□ -1.88
SCFD1-213ENST00000554776 PROB1E7EW31 1015 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 F5H0A9 414 aaPredicted RBP3.3□□□□□ -1.88
SCFD1-213ENST00000554776 MDM4O15151 490 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 INSIG1O15503 277 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 AHCYL1O43865 530 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 GJB3O75712 270 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 DDAH2O95865 285 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 IL1AP01583 271 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 CRYABP02511 175 aaKnown RBP3.3□□□□□ -1.88
SCFD1-213ENST00000554776 RARGP13631 454 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 ITGB6P18564 788 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 TBXAS1P24557 533 aaPredicted RBP3.3□□□□□ -1.88
SCFD1-213ENST00000554776 FMO4P31512 558 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 ABCD1P33897 745 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 HADHAP40939 763 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 TMEM115Q12893 351 aaPredicted RBP3.3□□□□□ -1.88
SCFD1-213ENST00000554776 PRKG2Q13237 762 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 FHL1Q13642 323 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 KCTD2Q14681 263 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 MEA1Q16626 185 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 ME3Q16798 604 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 EDRF1Q3B7T1 1238 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 HMBOX1Q6NT76 420 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 AAGABQ6PD74 315 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 CCDC129Q6ZRS4 1044 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 C9orf47Q6ZRZ4 202 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 IKBIPQ70UQ0 350 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 GPAT4Q86UL3 456 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 SLC25A41Q8N5S1 370 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 PDILTQ8N807 584 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 CCDC89Q8N998 374 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 KDM1BQ8NB78 822 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 CMASQ8NFW8 434 aaPredicted RBP3.3□□□□□ -1.88
SCFD1-213ENST00000554776 RASSF8Q8NHQ8 419 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 ETNPPLQ8TBG4 499 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 GDPD5Q8WTR4 605 aa3.3□□□□□ -1.88
SCFD1-213ENST00000554776 USP6NLQ92738 828 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms