RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 PIP5K1CO60331 668 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 EIF3JO75822 258 aaKnown RBP3.47□□□□□ -1.85
VRK1-202ENST00000553683 ACAA1P09110 424 aaPredicted RBP3.47□□□□□ -1.85
VRK1-202ENST00000553683 DAOP14920 347 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 ZNF8P17098 575 aaPredicted RBP3.47□□□□□ -1.85
VRK1-202ENST00000553683 TNFRSF8P28908 595 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 PSMC2P35998 433 aaKnown RBP3.47□□□□□ -1.85
VRK1-202ENST00000553683 THPOP40225 353 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 ART1P52961 327 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 PMS2P54278 862 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 YWHAZP63104 245 aaKnown RBP3.47□□□□□ -1.85
VRK1-202ENST00000553683 CHRNDQ07001 517 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 KIF5AQ12840 1032 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 HNF4GQ14541 408 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 LPIN1Q14693 890 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 NAPEPLDQ6IQ20 393 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 C17orf99Q6UX52 265 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 SUGP1Q8IWZ8 645 aaKnown RBP3.47□□□□□ -1.85
VRK1-202ENST00000553683 TCP11L2Q8N4U5 519 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 ANKRD42Q8N9B4 389 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 LSM14AQ8ND56 463 aaKnown RBP3.47□□□□□ -1.85
VRK1-202ENST00000553683 DNAAF1Q8NEP3 725 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 TNIP2Q8NFZ5 429 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 RFWD2Q8NHY2 731 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 ADAMTS14Q8WXS8 1223 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 CLSTN3Q9BQT9 956 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 NPFFR1Q9GZQ6 430 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 TLR8Q9NR97 1041 aaKnown RBP3.47□□□□□ -1.85
VRK1-202ENST00000553683 ALKBH4Q9NXW9 302 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 HCN3Q9P1Z3 774 aa3.47□□□□□ -1.85
VRK1-202ENST00000553683 GAGE10A6NGK3 116 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 PRR23D1E9PI22 279 aaPredicted RBP3.46□□□□□ -1.86
VRK1-202ENST00000553683 PEX12O00623 359 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 KLK10O43240 276 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 KCNJ13O60928 360 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 GAGE7O76087 117 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 GAGE12FP0CL80 117 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 GAGE12GP0CL81 117 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 GAGE12IP0CL82 117 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 PRR23D2P0DMB1 279 aaPredicted RBP3.46□□□□□ -1.86
VRK1-202ENST00000553683 PCNAP12004 261 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 CKMT1AP12532 417 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 HOXA11P31270 313 aaPredicted RBP3.46□□□□□ -1.86
VRK1-202ENST00000553683 RYKP34925 604 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 LIFRP42702 1097 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 PTPN9P43378 593 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 TMPRSS3P57727 454 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 GAGE1Q13065 139 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 GAGE4Q13068 117 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 SLC12A1Q13621 1099 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 ZNF585BQ52M93 769 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 DLK2Q6UY11 383 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 LRRC8DQ7L1W4 858 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 SFTPA2Q8IWL1 248 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 ZCCHC10Q8TBK6 192 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 ATOH1Q92858 354 aaPredicted RBP3.46□□□□□ -1.86
VRK1-202ENST00000553683 SNAPC3Q92966 411 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 LMAN2LQ9H0V9 348 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 EPHX3Q9H6B9 360 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 C6orf106Q9H6K1 298 aaPredicted RBP3.46□□□□□ -1.86
VRK1-202ENST00000553683 RIC8AQ9NPQ8 531 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 PCDHGB5Q9Y5G0 923 aa3.46□□□□□ -1.86
VRK1-202ENST00000553683 CCDC196A0A1B0GTZ2 297 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 CBY3A6NI87 242 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 BTBD18B2RXH4 712 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 TEX22C9J3V5 150 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 TAF4O00268 1085 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 SERPINI2O75830 405 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 GPTP24298 496 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 CHATP28329 748 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 FMO4P31512 558 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 MXI1P50539 228 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 POU3F1Q03052 451 aaPredicted RBP3.45□□□□□ -1.86
VRK1-202ENST00000553683 PLCB4Q15147 1175 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 ZRSR2Q15696 482 aaKnown RBP3.45□□□□□ -1.86
VRK1-202ENST00000553683 ATG16L1Q676U5 607 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 RETSATQ6NUM9 610 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 CYP26C1Q6V0L0 522 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 C11orf65Q8NCR3 313 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 RTP4Q96DX8 246 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 LRFN5Q96NI6 719 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 SCLT1Q96NL6 688 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 DUX5Q96PT3 197 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.45□□□□□ -1.86
VRK1-202ENST00000553683 LHPPQ9H008 270 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 CLK4Q9HAZ1 481 aaKnown RBP3.45□□□□□ -1.86
VRK1-202ENST00000553683 BEX4Q9NWD9 120 aaPredicted RBP3.45□□□□□ -1.86
VRK1-202ENST00000553683 TMEM160Q9NX00 188 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 PPP1R14DQ9NXH3 145 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 NDRG3Q9UGV2 375 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 CNOT7Q9UIV1 285 aaKnown RBP3.45□□□□□ -1.86
VRK1-202ENST00000553683 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.45□□□□□ -1.86
VRK1-202ENST00000553683 PAM16Q9Y3D7 125 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 DGKBQ9Y6T7 804 aa3.45□□□□□ -1.86
VRK1-202ENST00000553683 ADGRF5Q8IZF2 1346 aa3.44□□□□□ -1.86
VRK1-202ENST00000553683 IGLV5-52A0A0A0MRZ9 124 aa3.44□□□□□ -1.86
VRK1-202ENST00000553683 KDM4EB2RXH2 506 aaPredicted RBP3.44□□□□□ -1.86
VRK1-202ENST00000553683 PER2O15055 1255 aa3.44□□□□□ -1.86
VRK1-202ENST00000553683 SLC16A5O15375 505 aa3.44□□□□□ -1.86
VRK1-202ENST00000553683 MTA2O94776 668 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms