RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PLXNA4Q9HCM2 1894 aa26.62■■□□□ 1.85
CCDC88C-205ENST00000553403 CEP290O15078 2479 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 MUSKO15146 869 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 ATXN1LP0C7T5 689 aaKnown RBP26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 HLA-DPA1P20036 260 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 ALDH3A1P30838 453 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 LIG3P49916 1009 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 THOC5Q13769 683 aaKnown RBP26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 CNGA3Q16281 694 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 SPRED3Q2MJR0 410 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 GALNTL6Q49A17 601 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 SIRPB2Q5JXA9 342 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 LILRA6Q6PI73 481 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 CCDC149Q6ZUS6 474 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 NLRP9Q7RTR0 991 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 PSKH2Q96QS6 385 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 MECRQ9BV79 373 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 SMPD4Q9NXE4 827 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 INSL6Q9Y581 213 aa26.61■■□□□ 1.85
CCDC88C-205ENST00000553403 GOLGA8TH3BQL2 631 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 TSPAN3O60637 253 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 TOP3BO95985 862 aaKnown RBP26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 SCTRP47872 440 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 LAMB3Q13751 1172 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 CCDC153Q494R4 210 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 PPM1JQ5JR12 505 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 CMC1Q7Z7K0 106 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 GABPB2Q8TAK5 448 aaPredicted RBP26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 C7orf26Q96N11 449 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 TRIM55Q9BYV6 548 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 SLC12A4Q9UP95 1085 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 MYLKQ15746 1914 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 MIA3Q5JRA6 1907 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 CXCL14O95715 111 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 PROCP04070 461 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 FGF1P05230 155 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 CSRP3P50461 194 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 TMPRSS15P98073 1019 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 CDK18Q07002 472 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 CHI3L2Q15782 390 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 C16orf46Q6P387 395 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 Q6ZNB5 142 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 KLHL23Q8NBE8 558 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 C2CD4AQ8NCU7 369 aaPredicted RBP26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 CALML6Q8TD86 181 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 IFT43Q96FT9 208 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 ATXN7L3BQ96GX2 97 aa26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 CINPQ9BW66 212 aaPredicted RBP26.6■■□□□ 1.85
CCDC88C-205ENST00000553403 A0A096LPK6 155 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 TTC24A2A3L6 582 aaPredicted RBP26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 GREM1O60565 184 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 DCTN3O75935 186 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 GSRP00390 522 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 LRG1P02750 347 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 SERPINF2P08697 491 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 SPATA31D3P0C874 917 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 HDCP19113 662 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 CES1P23141 567 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 CA8P35219 290 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 GRM3Q14832 879 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 CXorf57Q6NSI4 855 aaKnown RBP26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 KIAA0408Q6ZU52 694 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 SPATA31D4Q6ZUB0 917 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 CLEC14AQ86T13 490 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 ARL14EPQ8N8R7 260 aaPredicted RBP26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 ADAMTS19Q8TE59 1207 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 MRPS31Q92665 395 aaKnown RBP26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 THOC1Q96FV9 657 aaKnown RBP26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 SLC22A12Q96S37 553 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 CYP2S1Q96SQ9 504 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 ZBED2Q9BTP6 218 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 NPHS2Q9NP85 383 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 ANKRD6Q9Y2G4 727 aa26.59■■□□□ 1.85
CCDC88C-205ENST00000553403 MROH6A6NGR9 719 aa26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 GFRA2O00451 464 aa26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 UBOX5O94941 541 aa26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 AHSGP02765 367 aa26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 PRKCGP05129 697 aa26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 ADH1AP07327 375 aa26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 DNAJB1P25685 340 aa26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 BST1Q10588 318 aa26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 FASTKD1Q53R41 847 aaKnown RBP26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 TXNDC8Q6A555 127 aa26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 LCA5Q86VQ0 697 aa26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 FAM217AQ8IXS0 508 aa26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 HJURPQ8NCD3 748 aaPredicted RBP26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 PPM1EQ8WY54 764 aa26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 LRRC3Q9BY71 257 aa26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 CPQQ9Y646 472 aa26.58■■□□□ 1.85
CCDC88C-205ENST00000553403 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 SLC34A2O95436 690 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 C2P06681 752 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 GABRB3P28472 473 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 GABRR2P28476 465 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 SETDB1Q15047 1291 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 RNF219Q5W0B1 726 aaPredicted RBP26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 NEPROQ6NW34 567 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 TMC8Q8IU68 726 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 C10orf67Q8IYJ2 551 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 FITM2Q8N6M3 262 aa26.57■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms