RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 FSTL5Q8N475 847 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CDKL2Q92772 493 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 PPP1R14BQ96C90 147 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 HPDLQ96IR7 371 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 SPATA13Q96N96 652 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 HNRNPABQ99729 332 aaKnown RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 R3HDMLQ9H3Y0 253 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 PDZD7Q9H5P4 517 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 NCKIPSDQ9NZQ3 722 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CD300AQ9UGN4 299 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 PGAP2Q9UHJ9 254 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 EVLQ9UI08 416 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CNOT11Q9UKZ1 510 aaKnown RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CDH7Q9ULB5 785 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 AURKCQ9UQB9 309 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 RAP2CQ9Y3L5 183 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 PTGDR2Q9Y5Y4 395 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 ST14Q9Y5Y6 855 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 USP3Q9Y6I4 520 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 TRIM64CA6NLI5 447 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 FAM155AB1AL88 458 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 TARM1B6A8C7 271 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 ADM5C9JUS6 153 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 PPEF2O14830 753 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 AURKAO14965 403 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 TADA2AO75478 443 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 OXSR1O95747 527 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF286BP0CG31 522 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 SLC35E2BP0CK96 405 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 APLP1P51693 650 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 PLK1P53350 603 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 RABGGTBP53611 331 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 IFITM3Q01628 133 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 MXD4Q14582 209 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CCDC153Q494R4 210 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 BOLA3Q53S33 107 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 C6orf183Q5T699 404 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 REP15Q6BDI9 236 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 XRRA1Q6P2D8 792 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 GALNT18Q6P9A2 607 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 TBPL2Q6SJ96 375 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 UTS2BQ765I0 119 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CATSPER4Q7RTX7 472 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 RETREG3Q86VR2 466 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 SPPL2CQ8IUH8 684 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CROCCP3Q8IVE0 287 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 SH3RF2Q8TEC5 729 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CYGBQ8WWM9 190 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 RSPH1Q8WYR4 309 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 DLG3Q92796 817 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 RNF34Q969K3 372 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 VPS39Q96JC1 886 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 MCMBPQ9BTE3 642 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 FTHL17Q9BXU8 183 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CYP4F12Q9HCS2 524 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 PLSCR2Q9NRY7 297 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 IARS2Q9NSE4 1012 aaKnown RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 KLK14Q9P0G3 267 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 THEGQ9P2T0 379 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 DNMT3BQ9UBC3 853 aaKnown RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 IPO11Q9UI26 975 aaKnown RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 SLC8A2Q9UPR5 921 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 USP22Q9UPT9 525 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 C1orf232A0A0U1RR37 186 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 SPATA31C2B4DYI2 1134 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 FAM72CH0Y354 149 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 DYNC1LI2O43237 492 aaPredicted RBP4.9□□□□□ -1.62
LIMA1-214ENST00000552783 CBFA2T3O75081 653 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 PGK1P00558 417 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 STAG3L1P0CL83 205 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 CCDC130P13994 396 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 ELK4P28324 431 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 NMBRP28336 390 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 IDUAP35475 653 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 EIF2B2P49770 351 aaKnown RBP4.9□□□□□ -1.62
LIMA1-214ENST00000552783 SLC7A2P52569 658 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 TUBA4AP68366 448 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 PIGFQ07326 219 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 VGLL4Q14135 290 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 CAPRIN1Q14444 709 aaKnown RBP4.9□□□□□ -1.62
LIMA1-214ENST00000552783 TARBP2Q15633 366 aaKnown RBP4.9□□□□□ -1.62
LIMA1-214ENST00000552783 ADRM1Q16186 407 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 GOLGA7BQ2TAP0 167 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 PDCD4Q53EL6 469 aaKnown RBP4.9□□□□□ -1.62
LIMA1-214ENST00000552783 AGKQ53H12 422 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 FAM72AQ5TYM5 149 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 IER5Q5VY09 327 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 FAM72DQ6L9T8 149 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 LRRC8EQ6NSJ5 796 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 PPP4R4Q6NUP7 873 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 C16orf87Q6PH81 154 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 MPZL3Q6UWV2 235 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 KCTD8Q6ZWB6 473 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 DPP9Q86TI2 863 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 FAM72BQ86X60 149 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF354CQ86Y25 554 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 SLC41A1Q8IVJ1 513 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 CDKL3Q8IVW4 592 aaPredicted RBP4.9□□□□□ -1.62
LIMA1-214ENST00000552783 DENND6AQ8IWF6 608 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 CMTR2Q8IYT2 770 aaKnown RBP4.9□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms