RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.3□□□□□ -0.12
PTCH1-217ENST00000548420 TMEM145Q8NBT3 493 aa14.3□□□□□ -0.12
PTCH1-217ENST00000548420 WFDC5Q8TCV5 224 aa14.3□□□□□ -0.12
PTCH1-217ENST00000548420 C18orf8Q96DM3 657 aa14.3□□□□□ -0.12
PTCH1-217ENST00000548420 TMA16Q96EY4 203 aaKnown RBP14.3□□□□□ -0.12
PTCH1-217ENST00000548420 TCTN2Q96GX1 697 aa14.3□□□□□ -0.12
PTCH1-217ENST00000548420 MYOCQ99972 504 aa14.3□□□□□ -0.12
PTCH1-217ENST00000548420 DUSP23Q9BVJ7 150 aa14.3□□□□□ -0.12
PTCH1-217ENST00000548420 FOXP3Q9BZS1 431 aa14.3□□□□□ -0.12
PTCH1-217ENST00000548420 PDCL3Q9H2J4 239 aa14.3□□□□□ -0.12
PTCH1-217ENST00000548420 DKK3Q9UBP4 350 aa14.3□□□□□ -0.12
PTCH1-217ENST00000548420 MYO6Q9UM54 1294 aa14.3□□□□□ -0.12
PTCH1-217ENST00000548420 ANKHD1Q8IWZ3 2542 aaKnown RBP14.29□□□□□ -0.12
PTCH1-217ENST00000548420 KCNU1A8MYU2 1149 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 C9orf172C9J069 976 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 AGRPO00253 132 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 MUSKO15146 869 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 DAB1O75553 588 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 CYBBP04839 570 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 UNGP13051 313 aaPredicted RBP14.29□□□□□ -0.12
PTCH1-217ENST00000548420 MMP8P22894 467 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 SLC6A4P31645 630 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 PSMD8P48556 350 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 CDK17Q00537 523 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 FILIP1LQ4L180 1135 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 TRIM72Q6ZMU5 477 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 IRF2BP2Q7Z5L9 587 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 LUZP1Q86V48 1076 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 OR13H1Q8NG92 308 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 WFIKKN2Q8TEU8 576 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 CPA5Q8WXQ8 436 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 PCMTD1Q96MG8 357 aaPredicted RBP14.29□□□□□ -0.12
PTCH1-217ENST00000548420 PCDHB18PQ96TA0 734 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 NPY6RQ99463 290 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 CASS4Q9NQ75 786 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.29□□□□□ -0.12
PTCH1-217ENST00000548420 RRN3Q9NYV6 651 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 GGA2Q9UJY4 613 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 TMEM59LQ9UK28 342 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 DMTF1Q9Y222 760 aa14.29□□□□□ -0.12
PTCH1-217ENST00000548420 NYNRINQ9P2P1 1898 aaKnown RBP14.29□□□□□ -0.12
PTCH1-217ENST00000548420 GOLGA6L7A0A1B0GV03 622 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 NEMP2A6NFY4 417 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 GRAP2O75791 330 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 PABPC1P11940 636 aaKnown RBP14.28□□□□□ -0.12
PTCH1-217ENST00000548420 CD70P32970 193 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 SGSHP51688 502 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 PTP4A2Q12974 167 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 EIF3IQ13347 325 aaKnown RBP14.28□□□□□ -0.12
PTCH1-217ENST00000548420 SPIDRQ14159 915 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 HNRNPA1L2Q32P51 320 aaKnown RBP14.28□□□□□ -0.12
PTCH1-217ENST00000548420 LACTB2Q53H82 288 aaPredicted RBP14.28□□□□□ -0.12
PTCH1-217ENST00000548420 ZC3H12AQ5D1E8 599 aaKnown RBP14.28□□□□□ -0.12
PTCH1-217ENST00000548420 OTUD1Q5VV17 481 aaPredicted RBP14.28□□□□□ -0.12
PTCH1-217ENST00000548420 NAA35Q5VZE5 725 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 RFWD3Q6PCD5 774 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.28□□□□□ -0.12
PTCH1-217ENST00000548420 BNIPLQ7Z465 357 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 NANOS1Q8WY41 292 aaKnown RBP14.28□□□□□ -0.12
PTCH1-217ENST00000548420 FAM131CQ96AQ9 280 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 PGAP3Q96FM1 320 aaPredicted RBP14.28□□□□□ -0.12
PTCH1-217ENST00000548420 LMLNQ96KR4 655 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 BTN2A3PQ96KV6 586 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 MRGPRX3Q96LB0 322 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 DDX50Q9BQ39 737 aaKnown RBP14.28□□□□□ -0.12
PTCH1-217ENST00000548420 CCDC3Q9BQI4 270 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 SYT11Q9BT88 431 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 EDEM3Q9BZQ6 932 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 TTYH3Q9C0H2 523 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 SYNCQ9H7C4 482 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 EVA1BQ9NVM1 165 aa14.28□□□□□ -0.12
PTCH1-217ENST00000548420 TPX2Q9ULW0 747 aaKnown RBP14.28□□□□□ -0.12
PTCH1-217ENST00000548420 PRAMEF26H0Y7S4 382 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 SLC2A3P11169 496 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 HOXB4P17483 251 aaPredicted RBP14.27□□□□□ -0.13
PTCH1-217ENST00000548420 PBX1P40424 430 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 GSCP56915 257 aaPredicted RBP14.27□□□□□ -0.13
PTCH1-217ENST00000548420 FANCCQ00597 558 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 DEFB133Q30KQ1 61 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 FIGNQ5HY92 759 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 MS4A13Q5J8X5 152 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 TMPRSS9Q7Z410 1059 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 DSG4Q86SJ6 1040 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 HEATR4Q86WZ0 1026 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 ZNF548Q8NEK5 533 aaPredicted RBP14.27□□□□□ -0.13
PTCH1-217ENST00000548420 PDCD6IPQ8WUM4 868 aaKnown RBP14.27□□□□□ -0.13
PTCH1-217ENST00000548420 USP7Q93009 1102 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 MYEOVQ96EZ4 313 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 PRMT1Q99873 361 aaKnown RBP14.27□□□□□ -0.13
PTCH1-217ENST00000548420 NUCKS1Q9H1E3 243 aaKnown RBP14.27□□□□□ -0.13
PTCH1-217ENST00000548420 SYNDIG1Q9H7V2 258 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 TMEM51Q9NW97 253 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 DDIT4Q9NX09 232 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.27□□□□□ -0.13
PTCH1-217ENST00000548420 AIPL1Q9NZN9 384 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 XPO7Q9UIA9 1087 aaKnown RBP14.27□□□□□ -0.13
PTCH1-217ENST00000548420 KLF15Q9UIH9 416 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 RABGEF1Q9UJ41 708 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 TP53TG5Q9Y2B4 290 aa14.27□□□□□ -0.13
PTCH1-217ENST00000548420 UNC13CQ8NB66 2214 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms