RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PAK6Q9NQU5 681 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 RNF146Q9NTX7 359 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 THAP1Q9NVV9 213 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 MID2Q9UJV3 735 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ELOA3CA0A087WX78 387 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ATP6AP2A0A1C7CYW4 349 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 UBA6A0AVT1 1052 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ELOA3DA6NLF2 546 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 BTNL10A8MVZ5 291 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 PDHXO00330 501 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 MEIS2O14770 477 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 LIN7AO14910 233 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 PLD2O14939 933 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 LSM1O15116 133 aaKnown RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 WDR46O15213 610 aaKnown RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 LIASO43766 372 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ATP6AP2O75787 350 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 SUPT7LO94864 414 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 MOCS2O96007 188 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ERVK-10P10266 1014 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 UQCRBP14927 111 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 TSPAN8P19075 237 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 STIP1P31948 543 aaKnown RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 CDK7P50613 346 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 KRT76Q01546 638 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 GAD2Q05329 585 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 DLG1Q12959 904 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 CBX3Q13185 183 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 NFIL3Q16649 462 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 FAM110CQ1W6H9 321 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ELOA3BQ3SY89 546 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 GLRA4Q5JXX5 417 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 SPDYCQ5MJ68 293 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 SNRNP48Q6IEG0 339 aaKnown RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 FAM131BQ86XD5 332 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 CDKL3Q8IVW4 592 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 CCDC103Q8IW40 242 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ABRAQ8N0Z2 381 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 SNX31Q8N9S9 440 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ELOA3Q8NG57 546 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 GMCL1Q96IK5 515 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 FAM210AQ96ND0 272 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 MTG1Q9BT17 334 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 FSD1LQ9BXM9 530 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 SUCOQ9UBS9 1254 aaKnown RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 SLC7A8Q9UHI5 535 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 USP18Q9UMW8 372 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 TRAF6Q9Y4K3 522 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 CDH23Q9H251 3354 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 CHD9Q3L8U1 2897 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 P4HA2O15460 535 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 CLOCKO15516 846 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 PHGDHO43175 533 aaKnown RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 MFN2O95140 757 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 MT-ND1P03886 318 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ASNSP08243 561 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 F7P08709 466 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 GFAPP14136 432 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 TGM2P21980 687 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 GCAP28676 217 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 SERPINB1P30740 379 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 SPRP35270 261 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 SREBF1P36956 1147 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 GSSP48637 474 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 CLK1P49759 484 aaKnown RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 RARRES1P49788 294 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 SERPINB9P50453 376 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 NEK2P51955 445 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 CACNB2Q08289 660 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 MAMLD1Q13495 774 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 DPYSL3Q14195 570 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 TRIM60Q495X7 471 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 SEL1L3Q68CR1 1132 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 TMC5Q6UXY8 1006 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 C1orf186Q6ZWK4 172 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 PTPRN2Q92932 1015 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 PRR11Q96HE9 360 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 PLEKHG4BQ96PX9 1271 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 MXRA8Q9BRK3 442 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 AARSD1Q9BTE6 412 aaKnown RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 SOX17Q9H6I2 414 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 PPCSQ9HAB8 311 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 CISHQ9NSE2 258 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 GIMAP4Q9NUV9 329 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 LNPEPQ9UIQ6 1025 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 RUVBL2Q9Y230 463 aaKnown RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 LRRC42Q9Y546 428 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ANGPTL3Q9Y5C1 460 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 EYSQ5T1H1 3165 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 CCL15-CCL14A0A0B4J2E2 113 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 KLHL33A6NCF5 533 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 INPP4BO15327 924 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ZBTB11O95625 1053 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 POLBP06746 335 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ITGA2BP08514 1039 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 PABPC1P11940 636 aaKnown RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ALADP13716 330 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ME2P23368 584 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 CCND2P30279 289 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 INPP1P49441 399 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms