RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 SWT1Q5T5J6 900 aaKnown RBP12.64□□□□□ -0.39
COL4A6-209ENST00000545689 BTN2A2Q8WVV5 523 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 QKIQ96PU8 341 aaKnown RBP eCLIP12.64□□□□□ -0.395e-7■■■■□ 24
COL4A6-209ENST00000545689 GLIS2Q9BZE0 524 aaPredicted RBP12.64□□□□□ -0.39
COL4A6-209ENST00000545689 PIF1Q9H611 641 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 VPS45Q9NRW7 570 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 COX7A2P14406 83 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 ARL2P36404 184 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 PPP1R26Q5T8A7 1209 aaPredicted RBP12.64□□□□□ -0.39
COL4A6-209ENST00000545689 FAM35AQ86V20 835 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 ULK2Q8IYT8 1036 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 ZCCHC7Q8N3Z6 543 aaKnown RBP12.64□□□□□ -0.39
COL4A6-209ENST00000545689 UTP15Q8TED0 518 aaKnown RBP12.64□□□□□ -0.39
COL4A6-209ENST00000545689 SNRNP27Q8WVK2 155 aaKnown RBP12.64□□□□□ -0.39
COL4A6-209ENST00000545689 PGLYRP2Q96PD5 576 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 TRPC4Q9UBN4 977 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 ZMYM5Q9UJ78 669 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 PLLPQ9Y342 182 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 COMMD3-BMI1R4GMX3 469 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 OTCP00480 354 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 TCF3P15923 654 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 CYP3A5P20815 502 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 CXCR2P25025 360 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 DPYSQ14117 519 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 PDK3Q15120 406 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 INAQ16352 499 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 KHDRBS2Q5VWX1 349 aaKnown RBP12.63□□□□□ -0.39
COL4A6-209ENST00000545689 CCDC149Q6ZUS6 474 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 ZSCAN18Q8TBC5 510 aaPredicted RBP12.63□□□□□ -0.39
COL4A6-209ENST00000545689 KCTD4Q8WVF5 259 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 PPP1R16AQ96I34 528 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 RIBC2Q9H4K1 309 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 MDM4O15151 490 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 ST13P50502 369 aaKnown RBP12.63□□□□□ -0.39
COL4A6-209ENST00000545689 RAB14P61106 215 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 ADGRD1Q6QNK2 874 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 ABRAXAS1Q6UWZ7 409 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 PROX1Q92786 737 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 COPS5Q92905 334 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 MUC13Q9H3R2 512 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 RNPEPQ9H4A4 650 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 HMG20AQ9NP66 347 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 CACNA2D2Q9NY47 1150 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 SLC9A3R1O14745 358 aaPredicted RBP12.63□□□□□ -0.39
COL4A6-209ENST00000545689 BANF1O75531 89 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 GSTM1P09488 218 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 CSH1P0DML2 217 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 CSH2P0DML3 217 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 PRDX6P30041 224 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 PLK1P53350 603 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 MAP2K5Q13163 448 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 CLYBLQ8N0X4 340 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 C10orf53Q8N6V4 93 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 PCDH20Q8N6Y1 951 aaKnown RBP12.63□□□□□ -0.39
COL4A6-209ENST00000545689 DAPK2Q9UIK4 370 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 OR6C75A6NL08 312 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 DARSP14868 501 aaKnown RBP12.63□□□□□ -0.39
COL4A6-209ENST00000545689 RPL5P46777 297 aaKnown RBP12.63□□□□□ -0.39
COL4A6-209ENST00000545689 FKBP1BP68106 108 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 ACOX1Q15067 660 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 PTPN20Q4JDL3 420 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 BROXQ5VW32 411 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 RAP1GAP2Q684P5 730 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 PPP4R4Q6NUP7 873 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 GPRIN3Q6ZVF9 776 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 MARK2Q7KZI7 788 aaKnown RBP12.63□□□□□ -0.39
COL4A6-209ENST00000545689 HJURPQ8NCD3 748 aaPredicted RBP12.63□□□□□ -0.39
COL4A6-209ENST00000545689 GPR20Q99678 358 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 OLFM1Q99784 485 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 PNPLA3Q9NST1 481 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 TBC1D30Q9Y2I9 924 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 A0A088AWK7 358 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 ZNF10P21506 573 aaPredicted RBP12.63□□□□□ -0.39
COL4A6-209ENST00000545689 C21orf59P57076 290 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 JOSD2Q8TAC2 188 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 OXCT2Q9BYC2 517 aaPredicted RBP12.63□□□□□ -0.39
COL4A6-209ENST00000545689 SNX8Q9Y5X2 465 aa12.63□□□□□ -0.39
COL4A6-209ENST00000545689 YDJCA8MPS7 323 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 CNPP09543 421 aaKnown RBP12.62□□□□□ -0.39
COL4A6-209ENST00000545689 POLR2EP19388 210 aaKnown RBP12.62□□□□□ -0.39
COL4A6-209ENST00000545689 CRADDP78560 199 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 POU5F1Q01860 360 aaKnown RBP12.62□□□□□ -0.39
COL4A6-209ENST00000545689 TRAF3Q13114 568 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 RFX4Q33E94 735 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 DEFB132Q7Z7B7 95 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 RNF148Q8N7C7 305 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 C1QTNF7Q9BXJ2 289 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 FGFBP2Q9BYJ0 223 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 ATP13A3Q9H7F0 1226 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 COG5Q9UP83 839 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 CDKN2BP42772 138 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 PTPN9P43378 593 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 DCTN2Q13561 401 aaKnown RBP12.62□□□□□ -0.39
COL4A6-209ENST00000545689 COL9A3Q14050 684 aaPredicted RBP12.62□□□□□ -0.39
COL4A6-209ENST00000545689 GNA13Q14344 377 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 NOMO2Q5JPE7 1267 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 EEF1DP3Q658K8 133 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 SPATA19Q7Z5L4 167 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 C10orf107Q8IVU9 208 aa12.62□□□□□ -0.39
COL4A6-209ENST00000545689 TLCD1Q96CP7 247 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms