RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, human

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33A-208	ENST00000543633	KIAA0408	Q6ZU52	694 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	PAQR9	Q6ZVX9	377 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	CARM1	Q86X55	608 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	SLC41A1	Q8IVJ1	513 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	PPHLN1	Q8NEY8	458 aa	Known RBP	13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	HM13	Q8TCT9	377 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	EME1	Q96AY2	570 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	PPP1R14B	Q96C90	147 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	PGLYRP2	Q96PD5	576 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	TBL1Y	Q9BQ87	522 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	OCEL1	Q9H607	264 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	COX16	Q9P0S2	106 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	HES2	Q9Y543	173 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	GABRD	O14764	452 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	CCDC166	P0CW27	439 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	DARS	P14868	501 aa	Known RBP	13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	CD1E	P15812	388 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	PAM	P19021	973 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	GABRB3	P28472	473 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	HTR7	P34969	479 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	CCR10	P46092	362 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	LRP8	Q14114	963 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	DGKD	Q16760	1214 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	ZNF792	Q3KQV3	632 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	PM20D1	Q6GTS8	502 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	KIAA0930	Q6ICG6	404 aa	Predicted RBP	13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	PACRGL	Q8N7B6	248 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	RNF169	Q8NCN4	708 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	GABPB2	Q8TAK5	448 aa	Predicted RBP	13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	NDRG1	Q92597	394 aa	Known RBP	13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	PBXIP1	Q96AQ6	731 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	TMA16	Q96EY4	203 aa	Known RBP	13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	FAM210A	Q96ND0	272 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	FCRL5	Q96RD9	977 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	PRKD2	Q9BZL6	878 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	ULBP1	Q9BZM6	244 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	ZCWPW1	Q9H0M4	648 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	ZNF408	Q9H9D4	720 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	PNPLA3	Q9NST1	481 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	CEPT1	Q9Y6K0	416 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	AK5	Q9Y6K8	562 aa		13.87	□□□□□ -0.19
VPS33A-208	ENST00000543633	CCDC160	A6NGH7	325 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	JUN	P05412	331 aa	Known RBP	13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	ATP6V1B1	P15313	513 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	CDH2	P19022	906 aa	Predicted RBP	13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	CCNC	P24863	283 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	ARCN1	P48444	511 aa	Known RBP	13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	CD151	P48509	253 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	CXCR3	P49682	368 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	GEM	P55040	296 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	IKBKE	Q14164	716 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	RAB41	Q5JT25	222 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	SAMD4B	Q5PRF9	694 aa	Known RBP	13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	ZNF618	Q5T7W0	954 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	REP15	Q6BDI9	236 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	DCLRE1A	Q6PJP8	1040 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	HFE2	Q6ZVN8	426 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	FASTKD5	Q7L8L6	764 aa	Known RBP	13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	ERI1	Q8IV48	349 aa	Known RBP	13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	GOLM1	Q8NBJ4	401 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	TXNDC5	Q8NBS9	432 aa	Known RBP	13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	C2CD4A	Q8NCU7	369 aa	Predicted RBP	13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	TSPAN14	Q8NG11	270 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	BIRC8	Q96P09	236 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	NPAS2	Q99743	824 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	TRMO	Q9BU70	441 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	SLC25A23	Q9BV35	468 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	POMK	Q9H5K3	350 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	SPAG4	Q9NPE6	437 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	CACNA2D2	Q9NY47	1150 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	TUBA8	Q9NY65	449 aa	Predicted RBP	13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	ADA2	Q9NZK5	511 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	HSFX1	Q9UBD0	423 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	G3BP2	Q9UN86	482 aa	Known RBP	13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	TCAF1	Q9Y4C2	921 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	MYLK	Q15746	1914 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	ARHGEF37	A1IGU5	675 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	DYTN	A2CJ06	578 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	TRMU	O75648	421 aa	Known RBP	13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	H6PD	O95479	791 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	GLRB	P48167	497 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	CDK9	P50750	372 aa	Known RBP	13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	LILRA4	P59901	499 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	FKBP1B	P68106	108 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	PFKP	Q01813	784 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	SULT2A1	Q06520	285 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	PDAP1	Q13442	181 aa	Known RBP	13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	TECRL	Q5HYJ1	363 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	GJC2	Q5T442	439 aa	Predicted RBP	13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	IL23R	Q5VWK5	629 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	C8orf82	Q6P1X6	216 aa	Predicted RBP	13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	IYD	Q6PHW0	289 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	TRIM67	Q6ZTA4	783 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	GALNT7	Q86SF2	657 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	GALNT4	Q8N4A0	578 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	CCNYL1	Q8N7R7	359 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	ANKFN1	Q8N957	763 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	NXNL1	Q96CM4	212 aa		13.86	□□□□□ -0.19
VPS33A-208	ENST00000543633	SLC10A4	Q96EP9	437 aa		13.86	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms