RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	ECEL1	O95672	775 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	APBB3	O95704	486 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	KRT14	P02533	472 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	DNTT	P04053	509 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	UGT2B4	P06133	528 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	SERPINF2	P08697	491 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	ZSCAN5DP	P0CG00	497 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	CTAGE8	P0CG41	777 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	NFKB1	P19838	968 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	XPA	P23025	273 aa	Predicted RBP	10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	AVPR2	P30518	371 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	SLC8A1	P32418	973 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	TNNT3	P45378	269 aa	Predicted RBP	10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	LMAN1	P49257	510 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	VPS41	P49754	854 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	TERF1	P54274	439 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	NIPAL4	Q0D2K0	466 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	GRM3	Q14832	879 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	PARP6	Q2NL67	630 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	P3H1	Q32P28	736 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	RALGPS1	Q5JS13	557 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	TMEM31	Q5JXX7	168 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	NCEH1	Q6PIU2	408 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	GDPD4	Q6W3E5	623 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	CTAGE6	Q86UF2	777 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	CAMK1D	Q8IU85	385 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	CTAGE4	Q8IX94	777 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	CEP112	Q8N8E3	955 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	DTWD2	Q8NBA8	298 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	TMIE	Q8NEW7	156 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	PIP4K2C	Q8TBX8	421 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	PDCD6IP	Q8WUM4	868 aa	Known RBP	10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	ZNF419	Q96HQ0	510 aa	Predicted RBP	10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	LRIG1	Q96JA1	1093 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	TUBGCP5	Q96RT8	1024 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	RBM15	Q96T37	977 aa	Known RBP eCLIP	10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	FAM129B	Q96TA1	746 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	MKRN2	Q9H000	416 aa	Known RBP	10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	SLC6A17	Q9H1V8	727 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	RSPH9	Q9H1X1	276 aa	Predicted RBP	10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	UBP1	Q9NZI7	540 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	DLGAP2	Q9P1A6	1054 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	PAK5	Q9P286	719 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	PPM1H	Q9ULR3	514 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	PCDHGC4	Q9Y5F7	938 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	TICRR	Q7Z2Z1	1910 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	NCOR1	O75376	2440 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545		A0A0C4DFX4	3053 aa		10.28	□□□□□ -0.76
CPSF7-221	ENST00000543545	GOLGA6C	A6NDK9	693 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	GOLGA6B	A6NDN3	693 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	MID1	O15344	667 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	PMPCB	O75439	489 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	ANXA9	O76027	345 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	ADH1B	P00325	375 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	CTSL	P07711	333 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	GOLGA6D	P0CG33	693 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	NDUFV2	P19404	249 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	CR2	P20023	1033 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	CA4	P22748	312 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	PSMB4	P28070	264 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	SERPINA4	P29622	427 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	CD68	P34810	354 aa	Predicted RBP	10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	RPL22	P35268	128 aa	Known RBP	10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	PXN	P49023	591 aa	Predicted RBP	10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	GEM	P55040	296 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	RPS14	P62263	151 aa	Known RBP	10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	DR1	Q01658	176 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	CSTF1	Q05048	431 aa	Known RBP	10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	SFSWAP	Q12872	951 aa	Known RBP	10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	CST6	Q15828	149 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	PCSK7	Q16549	785 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	KCTD19	Q17RG1	926 aa	Predicted RBP	10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	FAXC	Q5TGI0	409 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	CCDC70	Q6NSX1	233 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	KDELC2	Q7Z4H8	507 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	C1orf210	Q8IVY1	113 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	CAMKK1	Q8N5S9	505 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	SPATA22	Q8NHS9	363 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	ARRDC2	Q8TBH0	407 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	LRRC45	Q96CN5	670 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	RTP4	Q96DX8	246 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	IFT43	Q96FT9	208 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	PPP1R16A	Q96I34	528 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	MRGPRX1	Q96LB2	322 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	KLHL32	Q96NJ5	620 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	PPP1R2P1	Q96PQ5	205 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	FCRL5	Q96RD9	977 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	OMD	Q99983	421 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	CARD6	Q9BX69	1037 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	C1QTNF1	Q9BXJ1	281 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	OSBPL1A	Q9BXW6	950 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	CPEB1	Q9BZB8	566 aa	Known RBP	10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	GBA3	Q9H227	469 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	SUV39H2	Q9H5I1	410 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	RAB6B	Q9NRW1	208 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	GOLGA6A	Q9NYA3	693 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	ASIC3	Q9UHC3	531 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	FAM153A	Q9UHL3	310 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	SARDH	Q9UL12	918 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	NCKAP1	Q9Y2A7	1128 aa		10.27	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 57 ms