RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MCUR1Q96AQ8 359 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 TSNARE1Q96NA8 513 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 CCDC106Q9BWC9 280 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 MRPL9Q9BYD2 267 aaKnown RBP16.5■□□□□ 0.23
COL4A1-204ENST00000543140 NKX1-2Q9UD57 310 aaPredicted RBP16.5■□□□□ 0.23
COL4A1-204ENST00000543140 APOBEC2Q9Y235 224 aaKnown RBP16.5■□□□□ 0.23
COL4A1-204ENST00000543140 A0A0D9SEW6 157 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 HEATR9A2RTY3 570 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 HOXA2O43364 376 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 DIAPH2O60879 1101 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 GJB5O95377 273 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 SBK3P0C264 359 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 ZDHHC11BP0C7U3 371 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 SLC6A4P31645 630 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 CCR10P46092 362 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 IDH3AP50213 366 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 CSRP3P50461 194 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 SLC12A1Q13621 1099 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 SIRPB2Q5JXA9 342 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 SNX30Q5VWJ9 437 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 CNSTQ6PJW8 725 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 CCDC117Q8IWD4 279 aaPredicted RBP16.49■□□□□ 0.23
COL4A1-204ENST00000543140 TMEM151AQ8N4L1 468 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 TEX9Q8N6V9 391 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 OR6Y1Q8NGX8 325 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 ARRDC2Q8TBH0 407 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 NDNQ99608 321 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 SEMA3CQ99985 751 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 UBE2OQ9C0C9 1292 aaKnown RBP16.49■□□□□ 0.23
COL4A1-204ENST00000543140 HIPK3Q9H422 1215 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 MRM3Q9HC36 420 aaKnown RBP16.49■□□□□ 0.23
COL4A1-204ENST00000543140 ACOT9Q9Y305 439 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 LAMA2P24043 3122 aaKnown RBP16.49■□□□□ 0.23
COL4A1-204ENST00000543140 MUSKO15146 869 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 STMN1P16949 149 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 VEGFBP49765 207 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 TAS2R39P59534 338 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 RAB10P61026 200 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 RING1Q06587 406 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 LBRQ14739 615 aaKnown RBP16.49■□□□□ 0.23
COL4A1-204ENST00000543140 KIAA0930Q6ICG6 404 aaPredicted RBP16.49■□□□□ 0.23
COL4A1-204ENST00000543140 FSTL5Q8N475 847 aaPredicted RBP16.49■□□□□ 0.23
COL4A1-204ENST00000543140 C2CD4AQ8NCU7 369 aaPredicted RBP16.49■□□□□ 0.23
COL4A1-204ENST00000543140 NXNL1Q96CM4 212 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 TMEM175Q9BSA9 504 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 GATA5Q9BWX5 397 aaPredicted RBP16.49■□□□□ 0.23
COL4A1-204ENST00000543140 ARNT2Q9HBZ2 717 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 ATP13A1Q9HD20 1204 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 OXSMQ9NWU1 459 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 ANKRD6Q9Y2G4 727 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 KCTD3Q9Y597 815 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 PCDHB12Q9Y5F1 795 aa16.49■□□□□ 0.23
COL4A1-204ENST00000543140 F5H5T6 163 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 CHRNGP07510 517 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 EZRP15311 586 aaKnown RBP16.48■□□□□ 0.23
COL4A1-204ENST00000543140 ATP5C1P36542 298 aaKnown RBP16.48■□□□□ 0.23
COL4A1-204ENST00000543140 IL10RBQ08334 325 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 DLG1Q12959 904 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 PARP15Q460N3 678 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 RBM20Q5T481 1227 aaKnown RBP16.48■□□□□ 0.23
COL4A1-204ENST00000543140 FAM91A1Q658Y4 838 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 PTAR1Q7Z6K3 402 aaPredicted RBP16.48■□□□□ 0.23
COL4A1-204ENST00000543140 LDB1Q86U70 411 aaPredicted RBP16.48■□□□□ 0.23
COL4A1-204ENST00000543140 LRRC43Q8N309 656 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 TEX26Q8N6G2 289 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 OMDQ99983 421 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 VN1R3Q9BXE9 311 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 PRKD2Q9BZL6 878 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 SHCBP1LQ9BZQ2 653 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 MAN1C1Q9NR34 630 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 VPS45Q9NRW7 570 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 H0Y3Z8 333 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 ZNF195O14628 629 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 BUD23O43709 281 aaKnown RBP16.48■□□□□ 0.23
COL4A1-204ENST00000543140 ANP32DO95626 131 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 CD151P48509 253 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 SMARCB1Q12824 385 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 TSTD2Q5T7W7 516 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 KIAA1841Q6NSI8 718 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 OR52K2Q8NGK3 314 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 OR13J1Q8NGT2 312 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 OR6P1Q8NGX9 317 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 LBHD1Q9BQE6 289 aaPredicted RBP16.48■□□□□ 0.23
COL4A1-204ENST00000543140 SIKE1Q9BRV8 207 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 DNMT3LQ9UJW3 386 aa16.48■□□□□ 0.23
COL4A1-204ENST00000543140 PEX11AO75192 247 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 RPS24P62847 133 aaKnown RBP16.47■□□□□ 0.23
COL4A1-204ENST00000543140 MSLNQ13421 630 aaPredicted RBP16.47■□□□□ 0.23
COL4A1-204ENST00000543140 PREPLQ4J6C6 727 aaPredicted RBP16.47■□□□□ 0.23
COL4A1-204ENST00000543140 CFAP157Q5JU67 520 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 SWT1Q5T5J6 900 aaKnown RBP16.47■□□□□ 0.23
COL4A1-204ENST00000543140 ZYG11AQ6WRX3 759 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 DENND1CQ8IV53 801 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 RBM15BQ8NDT2 890 aaKnown RBP16.47■□□□□ 0.23
COL4A1-204ENST00000543140 OR7D4Q8NG98 312 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 SREK1Q8WXA9 508 aaKnown RBP16.47■□□□□ 0.23
COL4A1-204ENST00000543140 SGF29Q96ES7 293 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 PPP1R36Q96LQ0 422 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 NUDCD1Q96RS6 583 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 TACO1Q9BSH4 297 aaKnown RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms