RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 WDR48Q8TAF3 677 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 NAT6Q93015 286 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 LIN37Q96GY3 246 aaPredicted RBP18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 FAM81BQ96LP2 452 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 TM6SF2Q9BZW4 377 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 HECAQ9UBI9 543 aaPredicted RBP18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 ATXN7L1Q9ULK2 861 aaPredicted RBP18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 STAP1Q9ULZ2 295 aa18.11■□□□□ 0.49
CLSTN3-214ENST00000542663 AHCTF1Q8WYP5 2266 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 GOLGA6L4A6NEF3 574 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 YY2O15391 372 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 NOBOXO60393 691 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 SRGAP2O75044 1071 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 CELA2BP08218 269 aaPredicted RBP18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 RPIAP49247 311 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 GNA12Q03113 381 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 TRNP1Q6NT89 227 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 B3GNT8Q7Z7M8 397 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 SLC47A2Q86VL8 602 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 ZDHHC17Q8IUH5 632 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 ELOA2Q8IYF1 753 aaPredicted RBP18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 OR6K2Q8NGY2 324 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 RAB7BQ96AH8 199 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 TBATAQ96M53 351 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 SYNCQ9H7C4 482 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 RABGEF1Q9UJ41 708 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 PADI4Q9UM07 663 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 SPTA1P02549 2419 aa18.1■□□□□ 0.49
CLSTN3-214ENST00000542663 BIN1O00499 593 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 F9P00740 461 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 PNMA6AP0CW24 399 aaPredicted RBP18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 TSHRP16473 764 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 SLC5A2P31639 672 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 THOP1P52888 689 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 PTK2Q05397 1052 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 NFATC3Q12968 1075 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 PAK1Q13153 545 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 SRSF6Q13247 344 aaKnown RBP18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 SLC25A52Q3SY17 297 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 ZNF805Q5CZA5 627 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 BNIPLQ7Z465 357 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 PLPP6Q8IY26 295 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 DRC7Q8IY82 874 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 GLMNQ92990 594 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 ISG20Q96AZ6 181 aaKnown RBP18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 TRIM4Q9C037 500 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 ZYG11BQ9C0D3 744 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 SIX2Q9NPC8 291 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 NDFIP2Q9NV92 336 aa18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 ARHGEF17Q96PE2 2063 aaPredicted RBP18.09■□□□□ 0.49
CLSTN3-214ENST00000542663 NEMP1O14524 444 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 PLD2O14939 933 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 AREL1O15033 823 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 ANXA6P08133 673 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 PON1P27169 355 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 KRT9P35527 623 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 FLT3P36888 993 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 ACVRL1P37023 503 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 GABRB2P47870 512 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 CSRP3P50461 194 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 SNX16P57768 344 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 PTK2BQ14289 1009 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 TGIF1Q15583 401 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 ACBD5Q5T8D3 534 aaPredicted RBP18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 VPS36Q86VN1 386 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 HAPLN3Q96S86 360 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 SYNDIG1Q9H7V2 258 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 MBNL1Q9NR56 388 aaKnown RBP18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 PAXBP1Q9Y5B6 917 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 PCDHGA7Q9Y5G6 932 aa18.08■□□□□ 0.48
CLSTN3-214ENST00000542663 FAM170AA1A519 330 aa18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 FOXN3O00409 490 aaPredicted RBP18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 UGT2B4P06133 528 aa18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 UGT1A5P35504 534 aa18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 EIF4A3P38919 411 aaKnown RBP18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 YPEL5P62699 121 aa18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 LRRC73Q5JTD7 316 aa18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 FAM102AQ5T9C2 384 aaPredicted RBP18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 FAXCQ5TGI0 409 aa18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 ESRP1Q6NXG1 681 aaKnown RBP18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 MACC1Q6ZN28 852 aa18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 GBP6Q6ZN66 633 aa18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 XYLT1Q86Y38 959 aa18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 KYQ8NBH2 561 aa18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 TP53I13Q8NBR0 393 aaPredicted RBP18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 SLC13A1Q9BZW2 595 aa18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 EPB41L5Q9HCM4 733 aa18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 PPARGC1AQ9UBK2 798 aaKnown RBP18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 IL17BQ9UHF5 180 aa18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 ACSL6Q9UKU0 697 aa18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 SDK2Q58EX2 2172 aa18.07■□□□□ 0.48
CLSTN3-214ENST00000542663 CXorf51AA0A1B0GTR3 108 aa18.06■□□□□ 0.48
CLSTN3-214ENST00000542663 A0A1W2PQM1 296 aa18.06■□□□□ 0.48
CLSTN3-214ENST00000542663 D6RAR5 112 aa18.06■□□□□ 0.48
CLSTN3-214ENST00000542663 KRIT1O00522 736 aa18.06■□□□□ 0.48
CLSTN3-214ENST00000542663 TERTO14746 1132 aaKnown RBP18.06■□□□□ 0.48
CLSTN3-214ENST00000542663 HGFP14210 728 aa18.06■□□□□ 0.48
CLSTN3-214ENST00000542663 ITGB6P18564 788 aa18.06■□□□□ 0.48
CLSTN3-214ENST00000542663 ITIH2P19823 946 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms