RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 LRRC39Q96DD0 335 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 RTP4Q96DX8 246 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 PGM2Q96G03 612 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 SPATA17Q96L03 361 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 ATP6V1G3Q96LB4 118 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 HSPA12BQ96MM6 686 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 SERPINB11Q96P15 392 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 HAPLN3Q96S86 360 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 VAT1Q99536 393 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 SMOQ99835 787 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 SNRNP25Q9BV90 132 aaKnown RBP8.55□□□□□ -1.04
CHD4-208ENST00000540960 TXLNGYQ9BZA5 131 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 ULBP1Q9BZM6 244 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 NRSN2Q9GZP1 204 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 OSBPL2Q9H1P3 480 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 ATXN3LQ9H3M9 355 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 WDCPQ9H6R7 721 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 LRRC4CQ9HCJ2 640 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 STARD5Q9NSY2 213 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 CLIC5Q9NZA1 410 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 GRHL1Q9NZI5 618 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 VPS18Q9P253 973 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 BCCIPQ9P287 314 aaKnown RBP eCLIP8.55□□□□□ -1.04
CHD4-208ENST00000540960 PLEKHB1Q9UF11 243 aaPredicted RBP8.55□□□□□ -1.04
CHD4-208ENST00000540960 FETUBQ9UGM5 382 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 DNPEPQ9ULA0 475 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 SCML2Q9UQR0 700 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 ATP8A1Q9Y2Q0 1164 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 USP3Q9Y6I4 520 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 BSNQ9UPA5 3926 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 PCNX1Q96RV3 2341 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 ANK1P16157 1881 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 CRYBG3Q68DQ2 2970 aa8.55□□□□□ -1.04
CHD4-208ENST00000540960 A0A087WUV0 522 aaPredicted RBP8.54□□□□□ -1.04
CHD4-208ENST00000540960 FAM170AA1A519 330 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 ZSCAN5CA6NGD5 496 aaPredicted RBP8.54□□□□□ -1.04
CHD4-208ENST00000540960 TULP2O00295 520 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 FGF10O15520 208 aaPredicted RBP8.54□□□□□ -1.04
CHD4-208ENST00000540960 PSMD3O43242 534 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 GCATO75600 419 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 VNN2O95498 520 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 TTC4O95801 387 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 AGTP01019 485 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 IFNB1P01574 187 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 FAM153BP0C7A2 387 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 CHRM1P11229 460 aaPredicted RBP8.54□□□□□ -1.04
CHD4-208ENST00000540960 NCAM1P13591 858 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 ITGB6P18564 788 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 BDNFP23560 247 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 CYP2F1P24903 491 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 L1CAMP32004 1257 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 CCR1P32246 355 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 FDFT1P37268 417 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 PPP3CCP48454 512 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 CXCR3P49682 368 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 ITGA8P53708 1063 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 CYP4F8P98187 520 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 GPR17Q13304 367 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 MRPL58Q14197 206 aaKnown RBP8.54□□□□□ -1.04
CHD4-208ENST00000540960 RASA2Q15283 850 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 C15orf59Q2T9L4 293 aaPredicted RBP8.54□□□□□ -1.04
CHD4-208ENST00000540960 HLA-BQ31612 363 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 LINC00303Q3SY05 128 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 FAM153CQ494X1 144 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 ATP13A4Q4VNC1 1196 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 SLC45A4Q5BKX6 768 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 PPP6R3Q5H9R7 873 aaPredicted RBP8.54□□□□□ -1.04
CHD4-208ENST00000540960 BSPRYQ5W0U4 402 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 TPGS2Q68CL5 300 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 HIBCHQ6NVY1 386 aaPredicted RBP8.54□□□□□ -1.04
CHD4-208ENST00000540960 ZDHHC24Q6UX98 284 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 RNF19BQ6ZMZ0 732 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 BNIPLQ7Z465 357 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 DDX42Q86XP3 938 aaKnown RBP eCLIP8.54□□□□□ -1.04
CHD4-208ENST00000540960 CCNJLQ8IV13 435 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 RGL4Q8IZJ4 473 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 PGBD3Q8N328 593 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 ZNF276Q8N554 614 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 TXNDC5Q8NBS9 432 aaKnown RBP8.54□□□□□ -1.04
CHD4-208ENST00000540960 TFB1MQ8WVM0 346 aaKnown RBP8.54□□□□□ -1.04
CHD4-208ENST00000540960 ATG4AQ8WYN0 398 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 OVCA2Q8WZ82 227 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 RNF34Q969K3 372 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 SERPINB12Q96P63 405 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 ZIM3Q96PE6 472 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 PKMYT1Q99640 499 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 SLC46A2Q9BY10 475 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 CRISPLD1Q9H336 500 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 CATSPERBQ9H7T0 1116 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 THG1LQ9NWX6 298 aaKnown RBP8.54□□□□□ -1.04
CHD4-208ENST00000540960 DDIT4Q9NX09 232 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 TJP2Q9UDY2 1190 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 SEPT3Q9UH03 358 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 FAM153AQ9UHL3 310 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 TRHDEQ9UKU6 1024 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 FZD10Q9ULW2 581 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 R3HDM2Q9Y2K5 976 aaKnown RBP8.54□□□□□ -1.04
CHD4-208ENST00000540960 NME7Q9Y5B8 376 aa8.54□□□□□ -1.04
CHD4-208ENST00000540960 TIMM13Q9Y5L4 95 aaPredicted RBP8.54□□□□□ -1.04
CHD4-208ENST00000540960 NAV3Q8IVL0 2385 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms